Results 1 - 20 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24043 | 3' | -59.4 | NC_005262.1 | + | 62755 | 0.66 | 0.5664 |
Target: 5'- cGCCGcagcauucggcacguGGGUCGCCAgCGagggauUCGCGCCGa- -3' miRNA: 3'- -CGGC---------------UCUAGUGGU-GCg-----AGCGCGGCga -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 10892 | 0.66 | 0.562239 |
Target: 5'- gGUCGuGAUCGUCGCggcaGCUCGCGCaGCa -3' miRNA: 3'- -CGGCuCUAGUGGUG----CGAGCGCGgCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 46863 | 0.66 | 0.562239 |
Target: 5'- cGCCGuuGA-UACCGCGCgu-CGCCGCc -3' miRNA: 3'- -CGGCu-CUaGUGGUGCGagcGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 56640 | 0.66 | 0.562239 |
Target: 5'- gGCgGAuGAUgCGCC-C-CUCGCGCUGCUc -3' miRNA: 3'- -CGgCU-CUA-GUGGuGcGAGCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 47715 | 0.66 | 0.562239 |
Target: 5'- cGCCGGGcggcggcUCGCCGC-CUguaucuggUGCGCCGCc -3' miRNA: 3'- -CGGCUCu------AGUGGUGcGA--------GCGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 47404 | 0.66 | 0.562239 |
Target: 5'- cGCCGAaucGGUCGCCAgcuucagcuuUGcCUCGCcgaucuucGCCGCg -3' miRNA: 3'- -CGGCU---CUAGUGGU----------GC-GAGCG--------CGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 11937 | 0.66 | 0.562239 |
Target: 5'- cGUCGGGAaCAUgGCGCaCGCGCUGg- -3' miRNA: 3'- -CGGCUCUaGUGgUGCGaGCGCGGCga -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 27382 | 0.66 | 0.562239 |
Target: 5'- uGCCGAucuuGcUCGCCGCGCUCaugaUGuuGCUg -3' miRNA: 3'- -CGGCU----CuAGUGGUGCGAGc---GCggCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 11550 | 0.66 | 0.551874 |
Target: 5'- cGCCGGcuGAagugCAUCACGC--GCGCUGCUa -3' miRNA: 3'- -CGGCU--CUa---GUGGUGCGagCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 46243 | 0.66 | 0.551874 |
Target: 5'- cGUCgGAGAUCGCguUGag-GCGCCGCUg -3' miRNA: 3'- -CGG-CUCUAGUGguGCgagCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 7393 | 0.66 | 0.551874 |
Target: 5'- uCCGGGccgUACuCGCGCgagaaCGUGCCGCUc -3' miRNA: 3'- cGGCUCua-GUG-GUGCGa----GCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 43585 | 0.66 | 0.551874 |
Target: 5'- gGUCGAGGUCAgCGCGaacgcagauaUCGCGCaggugaCGCUc -3' miRNA: 3'- -CGGCUCUAGUgGUGCg---------AGCGCG------GCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 28393 | 0.66 | 0.551874 |
Target: 5'- uGCCucGAUCAUgcgcaCGCGCUUGCG-CGCa -3' miRNA: 3'- -CGGcuCUAGUG-----GUGCGAGCGCgGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 16888 | 0.66 | 0.551874 |
Target: 5'- cGCCGGGccgCACCACaC-CGCaCCGCa -3' miRNA: 3'- -CGGCUCua-GUGGUGcGaGCGcGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 48596 | 0.66 | 0.551874 |
Target: 5'- gGUCGAGcgCGCUguuaccugcgGCuGCcgUCGCGCCGCc -3' miRNA: 3'- -CGGCUCuaGUGG----------UG-CG--AGCGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 45378 | 0.66 | 0.55084 |
Target: 5'- gGCCGAcGAU-GCCgACGUUCGCGCggaaguuCGCg -3' miRNA: 3'- -CGGCU-CUAgUGG-UGCGAGCGCG-------GCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 27563 | 0.66 | 0.548775 |
Target: 5'- cGgCGAGGaCGCCGCGCagCGCGagaagccugccaauCCGCUc -3' miRNA: 3'- -CgGCUCUaGUGGUGCGa-GCGC--------------GGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 58940 | 0.66 | 0.541567 |
Target: 5'- cGCCGGcgugacgucgccGAUCugCGUGCcgaaGCGCCGCa -3' miRNA: 3'- -CGGCU------------CUAGugGUGCGag--CGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 13243 | 0.66 | 0.541567 |
Target: 5'- cGCCaagGAGuugUGCCGCGCagcgCGCGCgGCg -3' miRNA: 3'- -CGG---CUCua-GUGGUGCGa---GCGCGgCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 53323 | 0.66 | 0.541567 |
Target: 5'- aGgCGAGcg-ACCGCGC--GCGCCGCUa -3' miRNA: 3'- -CgGCUCuagUGGUGCGagCGCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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