miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 13243 0.66 0.541567
Target:  5'- cGCCaagGAGuugUGCCGCGCagcgCGCGCgGCg -3'
miRNA:   3'- -CGG---CUCua-GUGGUGCGa---GCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 53323 0.66 0.541567
Target:  5'- aGgCGAGcg-ACCGCGC--GCGCCGCUa -3'
miRNA:   3'- -CgGCUCuagUGGUGCGagCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 8273 0.66 0.531325
Target:  5'- gGCCGAGGaaGCUGC-C-CGCGUCGCUc -3'
miRNA:   3'- -CGGCUCUagUGGUGcGaGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 22933 0.66 0.531325
Target:  5'- cGCCGA---CGCCAUGCUCcGCGCgGg- -3'
miRNA:   3'- -CGGCUcuaGUGGUGCGAG-CGCGgCga -5'
24043 3' -59.4 NC_005262.1 + 41270 0.66 0.531325
Target:  5'- cGCCGGGcgCGCaCGCGaUCGCGgCGgUg -3'
miRNA:   3'- -CGGCUCuaGUG-GUGCgAGCGCgGCgA- -5'
24043 3' -59.4 NC_005262.1 + 52521 0.66 0.531325
Target:  5'- -aCGAGAUUGCCgauuGCGCUU-UGCCGCg -3'
miRNA:   3'- cgGCUCUAGUGG----UGCGAGcGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 49771 0.66 0.531325
Target:  5'- cCCGAGGcUCcgGCCGCuGC-CGCGCCGg- -3'
miRNA:   3'- cGGCUCU-AG--UGGUG-CGaGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 304 0.66 0.531325
Target:  5'- cGCCGua--CGgCAUGCUCGUGCgCGCg -3'
miRNA:   3'- -CGGCucuaGUgGUGCGAGCGCG-GCGa -5'
24043 3' -59.4 NC_005262.1 + 53655 0.66 0.531325
Target:  5'- uGCCGG--UCAgCGCGUgCGCGCCGa- -3'
miRNA:   3'- -CGGCUcuAGUgGUGCGaGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 11495 0.66 0.521154
Target:  5'- gGCCGc-GUCGCCGaGCUCG-GCUGCa -3'
miRNA:   3'- -CGGCucUAGUGGUgCGAGCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 45139 0.66 0.521154
Target:  5'- cGCC-AGAacgugCGCgacaagGCGCUCGCGCUGCg -3'
miRNA:   3'- -CGGcUCUa----GUGg-----UGCGAGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 2870 0.66 0.521154
Target:  5'- gGCCGAaAUUGCCG---UUGCGCCGCUa -3'
miRNA:   3'- -CGGCUcUAGUGGUgcgAGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 5284 0.66 0.521154
Target:  5'- cGCCcucGGUCgcgccgGCCGCGCcCGCGcCCGCg -3'
miRNA:   3'- -CGGcu-CUAG------UGGUGCGaGCGC-GGCGa -5'
24043 3' -59.4 NC_005262.1 + 46793 0.66 0.521154
Target:  5'- cGCCGGcuuGUcCACUGCGCgCGCGgCGCUg -3'
miRNA:   3'- -CGGCUc--UA-GUGGUGCGaGCGCgGCGA- -5'
24043 3' -59.4 NC_005262.1 + 11462 0.66 0.521154
Target:  5'- aUCGuGccUACCGCGCUCGCG-CGCg -3'
miRNA:   3'- cGGCuCuaGUGGUGCGAGCGCgGCGa -5'
24043 3' -59.4 NC_005262.1 + 33774 0.66 0.520141
Target:  5'- uGCCGA--UCGCCGCuaccgaccucaucGCUCGCGCgGg- -3'
miRNA:   3'- -CGGCUcuAGUGGUG-------------CGAGCGCGgCga -5'
24043 3' -59.4 NC_005262.1 + 23793 0.67 0.512066
Target:  5'- cGCCGcguGGUCgACCGUGCgccgguagacccacaCGCGCCGCUc -3'
miRNA:   3'- -CGGCu--CUAG-UGGUGCGa--------------GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 49518 0.67 0.51106
Target:  5'- cGCCGAGG--GCC-UGCUCGaggagcuGCCGCa -3'
miRNA:   3'- -CGGCUCUagUGGuGCGAGCg------CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 16412 0.67 0.51106
Target:  5'- cGCCGGGAUU-CUGCGC-CGCGaggCGCa -3'
miRNA:   3'- -CGGCUCUAGuGGUGCGaGCGCg--GCGa -5'
24043 3' -59.4 NC_005262.1 + 44520 0.67 0.51106
Target:  5'- aGCCu-GAUCGCCGCGCugaUCGUcuaccuccuGCCGUUc -3'
miRNA:   3'- -CGGcuCUAGUGGUGCG---AGCG---------CGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.