miRNA display CGI


Results 41 - 60 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 43697 0.67 0.51106
Target:  5'- uGCCGGcGAgcgUCACCugcgcgauaucuGCGUUCGCGCUGa- -3'
miRNA:   3'- -CGGCU-CU---AGUGG------------UGCGAGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 49518 0.67 0.51106
Target:  5'- cGCCGAGG--GCC-UGCUCGaggagcuGCCGCa -3'
miRNA:   3'- -CGGCUCUagUGGuGCGAGCg------CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 16412 0.67 0.51106
Target:  5'- cGCCGGGAUU-CUGCGC-CGCGaggCGCa -3'
miRNA:   3'- -CGGCUCUAGuGGUGCGaGCGCg--GCGa -5'
24043 3' -59.4 NC_005262.1 + 44520 0.67 0.51106
Target:  5'- aGCCu-GAUCGCCGCGCugaUCGUcuaccuccuGCCGUUc -3'
miRNA:   3'- -CGGcuCUAGUGGUGCG---AGCG---------CGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 17166 0.67 0.501048
Target:  5'- gGCCGGcAagGCCGCGCgcgaggaCGCGaCCGCg -3'
miRNA:   3'- -CGGCUcUagUGGUGCGa------GCGC-GGCGa -5'
24043 3' -59.4 NC_005262.1 + 30870 0.67 0.501048
Target:  5'- gGCCGAGGagUCGCCGaGCggccggauggUGaCGCCGCUc -3'
miRNA:   3'- -CGGCUCU--AGUGGUgCGa---------GC-GCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 57496 0.67 0.501048
Target:  5'- gGCCGAcGAggCGCCGaaguucaGCgUCGCGCCGg- -3'
miRNA:   3'- -CGGCU-CUa-GUGGUg------CG-AGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 60785 0.67 0.501048
Target:  5'- uUCGGGAUCGgcagucaCACGCUgCGCGuuCCGCUg -3'
miRNA:   3'- cGGCUCUAGUg------GUGCGA-GCGC--GGCGA- -5'
24043 3' -59.4 NC_005262.1 + 26969 0.67 0.501048
Target:  5'- aCCGAcGAagaaauggcaUCGCuCACGCccgccgagCGCGCCGCa -3'
miRNA:   3'- cGGCU-CU----------AGUG-GUGCGa-------GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 17075 0.67 0.501048
Target:  5'- cGCCGAuagGcgCGCCcgucgACGCggCGgGCCGCg -3'
miRNA:   3'- -CGGCU---CuaGUGG-----UGCGa-GCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 32874 0.67 0.500052
Target:  5'- cGCCGAGcuguUCGCCGCGUcgaacgUCggccaagccggcgGCGUCGCa -3'
miRNA:   3'- -CGGCUCu---AGUGGUGCG------AG-------------CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 45451 0.67 0.498062
Target:  5'- cCCGAGGUgCugUauugcugguucaggACGCcCGCGCCGCc -3'
miRNA:   3'- cGGCUCUA-GugG--------------UGCGaGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 15897 0.67 0.491124
Target:  5'- cGCCGcguGcgCGCgACGUg-GCGCCGCg -3'
miRNA:   3'- -CGGCu--CuaGUGgUGCGagCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 48492 0.67 0.491124
Target:  5'- uUCGGGAuuUCGCCGCGCUUcaGCGaggCGCg -3'
miRNA:   3'- cGGCUCU--AGUGGUGCGAG--CGCg--GCGa -5'
24043 3' -59.4 NC_005262.1 + 30906 0.67 0.491124
Target:  5'- cGCCGAGAcgcgCACCGgGUUUGCGauGUa -3'
miRNA:   3'- -CGGCUCUa---GUGGUgCGAGCGCggCGa -5'
24043 3' -59.4 NC_005262.1 + 1498 0.67 0.491124
Target:  5'- gGCCGcggucguggcGGAUCAUCAgCGCaaGgGCCGCg -3'
miRNA:   3'- -CGGC----------UCUAGUGGU-GCGagCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 60424 0.67 0.491124
Target:  5'- gGUCGAGAUCGCgAaccaaGCgaccgagaaCGCGCUGCg -3'
miRNA:   3'- -CGGCUCUAGUGgUg----CGa--------GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 17472 0.67 0.491124
Target:  5'- cGCCGAGuu--CCAggacgaaGCgCGCGCCGCg -3'
miRNA:   3'- -CGGCUCuaguGGUg------CGaGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 51129 0.67 0.491124
Target:  5'- cGCCGGucGA-CAagGCGCUCGaCGCCGUg -3'
miRNA:   3'- -CGGCU--CUaGUggUGCGAGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 38902 0.67 0.490136
Target:  5'- -gCGAGAcggUCAgCGuauccguUGCUCGCGCCGUg -3'
miRNA:   3'- cgGCUCU---AGUgGU-------GCGAGCGCGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.