miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 59 0.76 0.133348
Target:  5'- uGCCGGGGagGCCGCgGCUCGCgaagaagucgGCCGCg -3'
miRNA:   3'- -CGGCUCUagUGGUG-CGAGCG----------CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 304 0.66 0.531325
Target:  5'- cGCCGua--CGgCAUGCUCGUGCgCGCg -3'
miRNA:   3'- -CGGCucuaGUgGUGCGAGCGCG-GCGa -5'
24043 3' -59.4 NC_005262.1 + 1409 0.7 0.308888
Target:  5'- cGCUGAuGAUcCGCCACGaC-CGCGgCCGCUu -3'
miRNA:   3'- -CGGCU-CUA-GUGGUGC-GaGCGC-GGCGA- -5'
24043 3' -59.4 NC_005262.1 + 1498 0.67 0.491124
Target:  5'- gGCCGcggucguggcGGAUCAUCAgCGCaaGgGCCGCg -3'
miRNA:   3'- -CGGC----------UCUAGUGGU-GCGagCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 2870 0.66 0.521154
Target:  5'- gGCCGAaAUUGCCG---UUGCGCCGCUa -3'
miRNA:   3'- -CGGCUcUAGUGGUgcgAGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 3834 0.8 0.069287
Target:  5'- uGCCGAGcgCcCCGCGCgugaCGUGCCGCUg -3'
miRNA:   3'- -CGGCUCuaGuGGUGCGa---GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 4131 0.68 0.409993
Target:  5'- aGCCGGGcauaaaaaaacggCGCCGCGUg-GCGCCGUg -3'
miRNA:   3'- -CGGCUCua-----------GUGGUGCGagCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 4660 0.7 0.32383
Target:  5'- cCCGAGcagCGCCGcCGCUggcgcgagaUGCGCCGCg -3'
miRNA:   3'- cGGCUCua-GUGGU-GCGA---------GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 4971 0.69 0.397589
Target:  5'- cGCCGAagcaGGUCGaguCgGCGCUCggcaagcuGCGCCGCg -3'
miRNA:   3'- -CGGCU----CUAGU---GgUGCGAG--------CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 5166 0.77 0.116587
Target:  5'- cGCCGAGccgGUCGCaCGCGC-CGcCGCCGCg -3'
miRNA:   3'- -CGGCUC---UAGUG-GUGCGaGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 5244 0.68 0.415383
Target:  5'- gGCCGucaccGAUCAgCGCGCcgagcaggaUCaGCGCCGCc -3'
miRNA:   3'- -CGGCu----CUAGUgGUGCG---------AG-CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 5284 0.66 0.521154
Target:  5'- cGCCcucGGUCgcgccgGCCGCGCcCGCGcCCGCg -3'
miRNA:   3'- -CGGcu-CUAG------UGGUGCGaGCGC-GGCGa -5'
24043 3' -59.4 NC_005262.1 + 6164 0.69 0.388877
Target:  5'- aUCGAGAUCGuCaCGCGCUCcuGCGCCucGCg -3'
miRNA:   3'- cGGCUCUAGU-G-GUGCGAG--CGCGG--CGa -5'
24043 3' -59.4 NC_005262.1 + 6229 0.7 0.347239
Target:  5'- cGCCGAGAUgcugaagccCGCCGCGCgcaCGgucuuUGCCGCc -3'
miRNA:   3'- -CGGCUCUA---------GUGGUGCGa--GC-----GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 6681 0.7 0.329956
Target:  5'- aGCuCGAGGUCGCUGaucuggaauggaGCcugaUCGCGCCGCUc -3'
miRNA:   3'- -CG-GCUCUAGUGGUg-----------CG----AGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 7236 0.66 0.541567
Target:  5'- gGCCGGGuguuUCGCC-UGUUUGgCGUCGCa -3'
miRNA:   3'- -CGGCUCu---AGUGGuGCGAGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 7393 0.66 0.551874
Target:  5'- uCCGGGccgUACuCGCGCgagaaCGUGCCGCUc -3'
miRNA:   3'- cGGCUCua-GUG-GUGCGa----GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 7622 0.68 0.415383
Target:  5'- cGUCGAGcgCGCCGa---CGCGCCGCc -3'
miRNA:   3'- -CGGCUCuaGUGGUgcgaGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 8273 0.66 0.531325
Target:  5'- gGCCGAGGaaGCUGC-C-CGCGUCGCUc -3'
miRNA:   3'- -CGGCUCUagUGGUGcGaGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 10024 0.7 0.32383
Target:  5'- cGCCGucAGcgCGCUGCGCuUUGCGCCGgUg -3'
miRNA:   3'- -CGGC--UCuaGUGGUGCG-AGCGCGGCgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.