miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 10586 0.72 0.242077
Target:  5'- uGCUGcuGGcCGCCAUGCUgGCGCUGCUg -3'
miRNA:   3'- -CGGCu-CUaGUGGUGCGAgCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 10690 0.72 0.248177
Target:  5'- aGUCGuccauGUCAUCGaagcCGCUCGCGCCGCg -3'
miRNA:   3'- -CGGCuc---UAGUGGU----GCGAGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 10892 0.66 0.562239
Target:  5'- gGUCGuGAUCGUCGCggcaGCUCGCGCaGCa -3'
miRNA:   3'- -CGGCuCUAGUGGUG----CGAGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 10935 0.68 0.415383
Target:  5'- cGUCGAcAUCgaGCCGCGCUaCGCGCaGCa -3'
miRNA:   3'- -CGGCUcUAG--UGGUGCGA-GCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 10984 0.74 0.192656
Target:  5'- cGCCGGGAaCGCCggucGCGCUCGCaCgGCUg -3'
miRNA:   3'- -CGGCUCUaGUGG----UGCGAGCGcGgCGA- -5'
24043 3' -59.4 NC_005262.1 + 11231 0.7 0.331501
Target:  5'- cGCCGAGcUCGacaGCGacgaUCGCGCUGCg -3'
miRNA:   3'- -CGGCUCuAGUgg-UGCg---AGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 11406 0.73 0.208064
Target:  5'- cGCCGAagccgCGCCGCGC-CGgGCCGCc -3'
miRNA:   3'- -CGGCUcua--GUGGUGCGaGCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 11462 0.66 0.521154
Target:  5'- aUCGuGccUACCGCGCUCGCG-CGCg -3'
miRNA:   3'- cGGCuCuaGUGGUGCGAGCGCgGCGa -5'
24043 3' -59.4 NC_005262.1 + 11495 0.66 0.521154
Target:  5'- gGCCGc-GUCGCCGaGCUCG-GCUGCa -3'
miRNA:   3'- -CGGCucUAGUGGUgCGAGCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 11550 0.66 0.551874
Target:  5'- cGCCGGcuGAagugCAUCACGC--GCGCUGCUa -3'
miRNA:   3'- -CGGCU--CUa---GUGGUGCGagCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 11937 0.66 0.562239
Target:  5'- cGUCGGGAaCAUgGCGCaCGCGCUGg- -3'
miRNA:   3'- -CGGCUCUaGUGgUGCGaGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 12114 0.7 0.339304
Target:  5'- uGCCGGGGaCGCgCGCGaccagaUUGCGCCGUg -3'
miRNA:   3'- -CGGCUCUaGUG-GUGCg-----AGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 12119 0.69 0.397589
Target:  5'- cGCCGugcgcgcgagcAGAUCGCCGCGCUgGagaGCCa-- -3'
miRNA:   3'- -CGGC-----------UCUAGUGGUGCGAgCg--CGGcga -5'
24043 3' -59.4 NC_005262.1 + 12371 0.71 0.287472
Target:  5'- uGCCGAGAaaGCUcgGCUCGCcgGCCGCg -3'
miRNA:   3'- -CGGCUCUagUGGugCGAGCG--CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 12460 0.69 0.363505
Target:  5'- cGUCGAGAcgUCGCuCACGgg-GCGCCGCg -3'
miRNA:   3'- -CGGCUCU--AGUG-GUGCgagCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 12747 0.71 0.273854
Target:  5'- cGCaGGGuUCGCCGCGCgcCGCGCgCGCUu -3'
miRNA:   3'- -CGgCUCuAGUGGUGCGa-GCGCG-GCGA- -5'
24043 3' -59.4 NC_005262.1 + 13044 0.76 0.131225
Target:  5'- cGCCGAGccggucggcgaugccGUCGCgCACGCccuucagCGCGCCGCg -3'
miRNA:   3'- -CGGCUC---------------UAGUG-GUGCGa------GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 13243 0.66 0.541567
Target:  5'- cGCCaagGAGuugUGCCGCGCagcgCGCGCgGCg -3'
miRNA:   3'- -CGG---CUCua-GUGGUGCGa---GCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 14154 0.71 0.264633
Target:  5'- cGCCGGGAUugucCGCCGCGC-CGaggagugcggcaaGCCGCUc -3'
miRNA:   3'- -CGGCUCUA----GUGGUGCGaGCg------------CGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 15582 0.73 0.218364
Target:  5'- cGCCGGuGAgcgagcCGCCGCGCUCgguguaaGCGCCGUg -3'
miRNA:   3'- -CGGCU-CUa-----GUGGUGCGAG-------CGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.