miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 62871 0.67 0.485213
Target:  5'- cGCCGuGAagaugggcgacaccaUCACC-CGCcagCGCGCCGaCg -3'
miRNA:   3'- -CGGCuCU---------------AGUGGuGCGa--GCGCGGC-Ga -5'
24043 3' -59.4 NC_005262.1 + 62829 0.72 0.254404
Target:  5'- uGCCGAcGAUCgGCCACgGCUCGaCGCgGUa -3'
miRNA:   3'- -CGGCU-CUAG-UGGUG-CGAGC-GCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 62755 0.66 0.5664
Target:  5'- cGCCGcagcauucggcacguGGGUCGCCAgCGagggauUCGCGCCGa- -3'
miRNA:   3'- -CGGC---------------UCUAGUGGU-GCg-----AGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 61890 0.67 0.51106
Target:  5'- aGCgCGAGGcaugCGCCGCGCagGCGaaaaCGCg -3'
miRNA:   3'- -CG-GCUCUa---GUGGUGCGagCGCg---GCGa -5'
24043 3' -59.4 NC_005262.1 + 61710 0.69 0.363505
Target:  5'- cGCCGGGuUCGCUcggcGCGCUCugcuuacuuCGCCGCg -3'
miRNA:   3'- -CGGCUCuAGUGG----UGCGAGc--------GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 61626 0.77 0.119774
Target:  5'- cGCCGAGAUCGCCuuGCUguaGCGCUGg- -3'
miRNA:   3'- -CGGCUCUAGUGGugCGAg--CGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 61230 0.7 0.316293
Target:  5'- cGCCGcGAUCuGCUGCGCcagCGCGUCGUa -3'
miRNA:   3'- -CGGCuCUAG-UGGUGCGa--GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 60963 0.76 0.129827
Target:  5'- gGCCGAcuUCAUCGCGCUUuCGCCGCg -3'
miRNA:   3'- -CGGCUcuAGUGGUGCGAGcGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 60785 0.67 0.501048
Target:  5'- uUCGGGAUCGgcagucaCACGCUgCGCGuuCCGCUg -3'
miRNA:   3'- cGGCUCUAGUg------GUGCGA-GCGC--GGCGA- -5'
24043 3' -59.4 NC_005262.1 + 60670 0.67 0.51106
Target:  5'- cGCCGGGuUCaggaacagguagACCGCGCcgaGCGCCGg- -3'
miRNA:   3'- -CGGCUCuAG------------UGGUGCGag-CGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 60614 0.67 0.481291
Target:  5'- gGUCGAaGUCGaccgUCACGCUCuuggcggccuGCGCCGCg -3'
miRNA:   3'- -CGGCUcUAGU----GGUGCGAG----------CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 60493 0.68 0.442967
Target:  5'- gGgCGAGA-CGCCGgGC-CGCGCgGCg -3'
miRNA:   3'- -CgGCUCUaGUGGUgCGaGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 60424 0.67 0.491124
Target:  5'- gGUCGAGAUCGCgAaccaaGCgaccgagaaCGCGCUGCg -3'
miRNA:   3'- -CGGCUCUAGUGgUg----CGa--------GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 60232 0.67 0.465762
Target:  5'- gGCCGGGuacuUCGCCcaugccuucgccgcgACGCUgGCGCC-CUc -3'
miRNA:   3'- -CGGCUCu---AGUGG---------------UGCGAgCGCGGcGA- -5'
24043 3' -59.4 NC_005262.1 + 59496 0.68 0.45239
Target:  5'- gGUCGAGcgUugCGCGUgcgaugucgCGCGCCuGCUg -3'
miRNA:   3'- -CGGCUCuaGugGUGCGa--------GCGCGG-CGA- -5'
24043 3' -59.4 NC_005262.1 + 59375 0.71 0.287472
Target:  5'- cGCCGAGcUC-CagGCGCUCGCGCaGCa -3'
miRNA:   3'- -CGGCUCuAGuGg-UGCGAGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 59126 0.67 0.471555
Target:  5'- cGCCGAGGcgaaccgGCCGgGC-CGCGUCGCc -3'
miRNA:   3'- -CGGCUCUag-----UGGUgCGaGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 59014 0.7 0.339304
Target:  5'- aCCGAGAagcgcgCGCCAuCGgUCGgGCCGCc -3'
miRNA:   3'- cGGCUCUa-----GUGGU-GCgAGCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 58940 0.66 0.541567
Target:  5'- cGCCGGcgugacgucgccGAUCugCGUGCcgaaGCGCCGCa -3'
miRNA:   3'- -CGGCU------------CUAGugGUGCGag--CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 58052 0.68 0.415383
Target:  5'- -gCGGGcgCGCCaauuucaagcGCGCUCGCGCC-CUc -3'
miRNA:   3'- cgGCUCuaGUGG----------UGCGAGCGCGGcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.