miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 28157 0.71 0.301617
Target:  5'- cCCGAGcgCGCgGCGCaacugCGCGCgGCg -3'
miRNA:   3'- cGGCUCuaGUGgUGCGa----GCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 17652 0.72 0.230252
Target:  5'- gGCaGAGAUCGCC-CGCcagCGCGCCGa- -3'
miRNA:   3'- -CGgCUCUAGUGGuGCGa--GCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 56917 0.72 0.242077
Target:  5'- cGgCGAGAUCaagGCCGCGCUCgagaaGCGCaCGCc -3'
miRNA:   3'- -CgGCUCUAG---UGGUGCGAG-----CGCG-GCGa -5'
24043 3' -59.4 NC_005262.1 + 62829 0.72 0.254404
Target:  5'- uGCCGAcGAUCgGCCACgGCUCGaCGCgGUa -3'
miRNA:   3'- -CGGCU-CUAG-UGGUG-CGAGC-GCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 14154 0.71 0.264633
Target:  5'- cGCCGGGAUugucCGCCGCGC-CGaggagugcggcaaGCCGCUc -3'
miRNA:   3'- -CGGCUCUA----GUGGUGCGaGCg------------CGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 17409 0.71 0.267242
Target:  5'- uGCCGAGAcgcugggCGCCACGCUggacgaccUGCGCuCGUUc -3'
miRNA:   3'- -CGGCUCUa------GUGGUGCGA--------GCGCG-GCGA- -5'
24043 3' -59.4 NC_005262.1 + 20581 0.71 0.280598
Target:  5'- cCCGGcGAgCAgCGCGCggCGCGCCGCa -3'
miRNA:   3'- cGGCU-CUaGUgGUGCGa-GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 33659 0.71 0.287472
Target:  5'- -aCGAGcgCGCCuCGCUgGuCGCCGCg -3'
miRNA:   3'- cgGCUCuaGUGGuGCGAgC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 59375 0.71 0.287472
Target:  5'- cGCCGAGcUC-CagGCGCUCGCGCaGCa -3'
miRNA:   3'- -CGGCUCuAGuGg-UGCGAGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 40129 0.73 0.213432
Target:  5'- cCCGAaagUACgACGCUCGCGCUGCa -3'
miRNA:   3'- cGGCUcuaGUGgUGCGAGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 11406 0.73 0.208064
Target:  5'- cGCCGAagccgCGCCGCGC-CGgGCCGCc -3'
miRNA:   3'- -CGGCUcua--GUGGUGCGaGCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 10984 0.74 0.192656
Target:  5'- cGCCGGGAaCGCCggucGCGCUCGCaCgGCUg -3'
miRNA:   3'- -CGGCUCUaGUGG----UGCGAGCGcGgCGA- -5'
24043 3' -59.4 NC_005262.1 + 3834 0.8 0.069287
Target:  5'- uGCCGAGcgCcCCGCGCgugaCGUGCCGCUg -3'
miRNA:   3'- -CGGCUCuaGuGGUGCGa---GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 22198 0.8 0.073233
Target:  5'- aGCCGAGAaCGCCGgGCUCGCGCuCGaCa -3'
miRNA:   3'- -CGGCUCUaGUGGUgCGAGCGCG-GC-Ga -5'
24043 3' -59.4 NC_005262.1 + 38436 0.8 0.073233
Target:  5'- gGUCGAGAUCACgccggacgacggCACGCUCGuCGCCGUa -3'
miRNA:   3'- -CGGCUCUAGUG------------GUGCGAGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 59 0.76 0.133348
Target:  5'- uGCCGGGGagGCCGCgGCUCGCgaagaagucgGCCGCg -3'
miRNA:   3'- -CGGCUCUagUGGUG-CGAGCG----------CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 50794 0.76 0.136957
Target:  5'- aGCCGaAGGUCGCCgagggcauggaGCGCuUCGCGCCGg- -3'
miRNA:   3'- -CGGC-UCUAGUGG-----------UGCG-AGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 50249 0.75 0.159288
Target:  5'- gGCCGAGAUCgACCgccgcaacgagggcGCGCcCGCGCCGg- -3'
miRNA:   3'- -CGGCUCUAG-UGG--------------UGCGaGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 25906 0.74 0.18012
Target:  5'- uGCCGAGcagcgcgcaugguacGUCGCCACGCgCGaCGCCGaCUu -3'
miRNA:   3'- -CGGCUC---------------UAGUGGUGCGaGC-GCGGC-GA- -5'
24043 3' -59.4 NC_005262.1 + 52531 0.74 0.182948
Target:  5'- gGCCGAGGagAUCGCGCUgGCGCagGCg -3'
miRNA:   3'- -CGGCUCUagUGGUGCGAgCGCGg-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.