miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 27382 0.66 0.562239
Target:  5'- uGCCGAucuuGcUCGCCGCGCUCaugaUGuuGCUg -3'
miRNA:   3'- -CGGCU----CuAGUGGUGCGAGc---GCggCGA- -5'
24043 3' -59.4 NC_005262.1 + 52521 0.66 0.531325
Target:  5'- -aCGAGAUUGCCgauuGCGCUU-UGCCGCg -3'
miRNA:   3'- cgGCUCUAGUGG----UGCGAGcGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 46793 0.66 0.521154
Target:  5'- cGCCGGcuuGUcCACUGCGCgCGCGgCGCUg -3'
miRNA:   3'- -CGGCUc--UA-GUGGUGCGaGCGCgGCGA- -5'
24043 3' -59.4 NC_005262.1 + 49273 0.8 0.063751
Target:  5'- uGCCgGAGAUCAUCGcCGUgCGCGCCGCUg -3'
miRNA:   3'- -CGG-CUCUAGUGGU-GCGaGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 56640 0.66 0.562239
Target:  5'- gGCgGAuGAUgCGCC-C-CUCGCGCUGCUc -3'
miRNA:   3'- -CGgCU-CUA-GUGGuGcGAGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 7393 0.66 0.551874
Target:  5'- uCCGGGccgUACuCGCGCgagaaCGUGCCGCUc -3'
miRNA:   3'- cGGCUCua-GUG-GUGCGa----GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 48596 0.66 0.551874
Target:  5'- gGUCGAGcgCGCUguuaccugcgGCuGCcgUCGCGCCGCc -3'
miRNA:   3'- -CGGCUCuaGUGG----------UG-CG--AGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 28393 0.66 0.551874
Target:  5'- uGCCucGAUCAUgcgcaCGCGCUUGCG-CGCa -3'
miRNA:   3'- -CGGcuCUAGUG-----GUGCGAGCGCgGCGa -5'
24043 3' -59.4 NC_005262.1 + 58940 0.66 0.541567
Target:  5'- cGCCGGcgugacgucgccGAUCugCGUGCcgaaGCGCCGCa -3'
miRNA:   3'- -CGGCU------------CUAGugGUGCGag--CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 41270 0.66 0.531325
Target:  5'- cGCCGGGcgCGCaCGCGaUCGCGgCGgUg -3'
miRNA:   3'- -CGGCUCuaGUG-GUGCgAGCGCgGCgA- -5'
24043 3' -59.4 NC_005262.1 + 48013 0.66 0.541567
Target:  5'- uUCGAuGUCGCCgGCGCUCGgCGuCUGCa -3'
miRNA:   3'- cGGCUcUAGUGG-UGCGAGC-GC-GGCGa -5'
24043 3' -59.4 NC_005262.1 + 13243 0.66 0.541567
Target:  5'- cGCCaagGAGuugUGCCGCGCagcgCGCGCgGCg -3'
miRNA:   3'- -CGG---CUCua-GUGGUGCGa---GCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 47404 0.66 0.562239
Target:  5'- cGCCGAaucGGUCGCCAgcuucagcuuUGcCUCGCcgaucuucGCCGCg -3'
miRNA:   3'- -CGGCU---CUAGUGGU----------GC-GAGCG--------CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 304 0.66 0.531325
Target:  5'- cGCCGua--CGgCAUGCUCGUGCgCGCg -3'
miRNA:   3'- -CGGCucuaGUgGUGCGAGCGCG-GCGa -5'
24043 3' -59.4 NC_005262.1 + 46863 0.66 0.562239
Target:  5'- cGCCGuuGA-UACCGCGCgu-CGCCGCc -3'
miRNA:   3'- -CGGCu-CUaGUGGUGCGagcGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 45378 0.66 0.55084
Target:  5'- gGCCGAcGAU-GCCgACGUUCGCGCggaaguuCGCg -3'
miRNA:   3'- -CGGCU-CUAgUGG-UGCGAGCGCG-------GCGa -5'
24043 3' -59.4 NC_005262.1 + 53655 0.66 0.531325
Target:  5'- uGCCGG--UCAgCGCGUgCGCGCCGa- -3'
miRNA:   3'- -CGGCUcuAGUgGUGCGaGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 5284 0.66 0.521154
Target:  5'- cGCCcucGGUCgcgccgGCCGCGCcCGCGcCCGCg -3'
miRNA:   3'- -CGGcu-CUAG------UGGUGCGaGCGC-GGCGa -5'
24043 3' -59.4 NC_005262.1 + 10892 0.66 0.562239
Target:  5'- gGUCGuGAUCGUCGCggcaGCUCGCGCaGCa -3'
miRNA:   3'- -CGGCuCUAGUGGUG----CGAGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 46243 0.66 0.551874
Target:  5'- cGUCgGAGAUCGCguUGag-GCGCCGCUg -3'
miRNA:   3'- -CGG-CUCUAGUGguGCgagCGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.