miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 5' -54.4 NC_005262.1 + 30728 0.66 0.811147
Target:  5'- uUGUcCGACgCGGGCaCCUugccGAGCGUCg -3'
miRNA:   3'- cAUA-GCUGgGCUCG-GGGuu--CUUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 60498 0.66 0.786151
Target:  5'- ----aGACgCCGGGCCgcgcggcgcaggccgCCAAGAGCGUg -3'
miRNA:   3'- cauagCUG-GGCUCGG---------------GGUUCUUGCAg -5'
24043 5' -54.4 NC_005262.1 + 54307 0.66 0.782205
Target:  5'- --cUCGAacaUGAGCCgCCAGG-ACGUCa -3'
miRNA:   3'- cauAGCUgg-GCUCGG-GGUUCuUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 4320 0.66 0.782205
Target:  5'- -cGUCGACUacggCGAGCCUCGcGGGcCGUCc -3'
miRNA:   3'- caUAGCUGG----GCUCGGGGUuCUU-GCAG- -5'
24043 5' -54.4 NC_005262.1 + 63380 0.66 0.772234
Target:  5'- -cGUCGACgCCGAGCCagCAGccGGcCGUCa -3'
miRNA:   3'- caUAGCUG-GGCUCGGg-GUU--CUuGCAG- -5'
24043 5' -54.4 NC_005262.1 + 22296 0.67 0.76212
Target:  5'- ---gUGGCCCGAGCUggCAGGAcuacgACGUCa -3'
miRNA:   3'- cauaGCUGGGCUCGGg-GUUCU-----UGCAG- -5'
24043 5' -54.4 NC_005262.1 + 59399 0.67 0.76212
Target:  5'- -cGUCGucauGCCCGAGCCgCCGuccGGcAUGUCc -3'
miRNA:   3'- caUAGC----UGGGCUCGG-GGU---UCuUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 56234 0.67 0.751874
Target:  5'- -gGUCGACCCGA---UCAAGGgcGCGUCg -3'
miRNA:   3'- caUAGCUGGGCUcggGGUUCU--UGCAG- -5'
24043 5' -54.4 NC_005262.1 + 54766 0.68 0.70979
Target:  5'- -cGUCGACgCCGAGgCgaCCGAGAaggccaacgACGUCg -3'
miRNA:   3'- caUAGCUG-GGCUCgG--GGUUCU---------UGCAG- -5'
24043 5' -54.4 NC_005262.1 + 17091 0.68 0.688249
Target:  5'- -cGUCGACgcggCGGGCCgCGAGGAgGUCc -3'
miRNA:   3'- caUAGCUGg---GCUCGGgGUUCUUgCAG- -5'
24043 5' -54.4 NC_005262.1 + 6808 0.68 0.684997
Target:  5'- --uUCGACaagcaCGGGCCCgGcaucauggaagugaAGAACGUCg -3'
miRNA:   3'- cauAGCUGg----GCUCGGGgU--------------UCUUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 48209 0.69 0.622682
Target:  5'- -gAUCGACgCCGAGCUCUugcgcgcGGcGCGUCa -3'
miRNA:   3'- caUAGCUG-GGCUCGGGGu------UCuUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 54695 0.69 0.600786
Target:  5'- ---aCGAgCCGAGCCgCGAGuuguagcuGACGUCg -3'
miRNA:   3'- cauaGCUgGGCUCGGgGUUC--------UUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 49850 0.69 0.599694
Target:  5'- ---gCGGCCgGAGCCUCGGGcgcgggcgccgccGGCGUCg -3'
miRNA:   3'- cauaGCUGGgCUCGGGGUUC-------------UUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 1648 0.7 0.557381
Target:  5'- --cUCGAUUCGAGCCUacgcAGAugGUCg -3'
miRNA:   3'- cauAGCUGGGCUCGGGgu--UCUugCAG- -5'
24043 5' -54.4 NC_005262.1 + 15343 0.75 0.320805
Target:  5'- -cGUCGAagugcaggCCGGGCCCgAAGAACGUUg -3'
miRNA:   3'- caUAGCUg-------GGCUCGGGgUUCUUGCAG- -5'
24043 5' -54.4 NC_005262.1 + 36983 1.1 0.001264
Target:  5'- gGUAUCGACCCGAGCCCCAAGAACGUCg -3'
miRNA:   3'- -CAUAGCUGGGCUCGGGGUUCUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.