Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24043 | 5' | -54.4 | NC_005262.1 | + | 30728 | 0.66 | 0.811147 |
Target: 5'- uUGUcCGACgCGGGCaCCUugccGAGCGUCg -3' miRNA: 3'- cAUA-GCUGgGCUCG-GGGuu--CUUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 60498 | 0.66 | 0.786151 |
Target: 5'- ----aGACgCCGGGCCgcgcggcgcaggccgCCAAGAGCGUg -3' miRNA: 3'- cauagCUG-GGCUCGG---------------GGUUCUUGCAg -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 54307 | 0.66 | 0.782205 |
Target: 5'- --cUCGAacaUGAGCCgCCAGG-ACGUCa -3' miRNA: 3'- cauAGCUgg-GCUCGG-GGUUCuUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 4320 | 0.66 | 0.782205 |
Target: 5'- -cGUCGACUacggCGAGCCUCGcGGGcCGUCc -3' miRNA: 3'- caUAGCUGG----GCUCGGGGUuCUU-GCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 63380 | 0.66 | 0.772234 |
Target: 5'- -cGUCGACgCCGAGCCagCAGccGGcCGUCa -3' miRNA: 3'- caUAGCUG-GGCUCGGg-GUU--CUuGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 22296 | 0.67 | 0.76212 |
Target: 5'- ---gUGGCCCGAGCUggCAGGAcuacgACGUCa -3' miRNA: 3'- cauaGCUGGGCUCGGg-GUUCU-----UGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 59399 | 0.67 | 0.76212 |
Target: 5'- -cGUCGucauGCCCGAGCCgCCGuccGGcAUGUCc -3' miRNA: 3'- caUAGC----UGGGCUCGG-GGU---UCuUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 56234 | 0.67 | 0.751874 |
Target: 5'- -gGUCGACCCGA---UCAAGGgcGCGUCg -3' miRNA: 3'- caUAGCUGGGCUcggGGUUCU--UGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 54766 | 0.68 | 0.70979 |
Target: 5'- -cGUCGACgCCGAGgCgaCCGAGAaggccaacgACGUCg -3' miRNA: 3'- caUAGCUG-GGCUCgG--GGUUCU---------UGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 17091 | 0.68 | 0.688249 |
Target: 5'- -cGUCGACgcggCGGGCCgCGAGGAgGUCc -3' miRNA: 3'- caUAGCUGg---GCUCGGgGUUCUUgCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 6808 | 0.68 | 0.684997 |
Target: 5'- --uUCGACaagcaCGGGCCCgGcaucauggaagugaAGAACGUCg -3' miRNA: 3'- cauAGCUGg----GCUCGGGgU--------------UCUUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 48209 | 0.69 | 0.622682 |
Target: 5'- -gAUCGACgCCGAGCUCUugcgcgcGGcGCGUCa -3' miRNA: 3'- caUAGCUG-GGCUCGGGGu------UCuUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 54695 | 0.69 | 0.600786 |
Target: 5'- ---aCGAgCCGAGCCgCGAGuuguagcuGACGUCg -3' miRNA: 3'- cauaGCUgGGCUCGGgGUUC--------UUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 49850 | 0.69 | 0.599694 |
Target: 5'- ---gCGGCCgGAGCCUCGGGcgcgggcgccgccGGCGUCg -3' miRNA: 3'- cauaGCUGGgCUCGGGGUUC-------------UUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 1648 | 0.7 | 0.557381 |
Target: 5'- --cUCGAUUCGAGCCUacgcAGAugGUCg -3' miRNA: 3'- cauAGCUGGGCUCGGGgu--UCUugCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 15343 | 0.75 | 0.320805 |
Target: 5'- -cGUCGAagugcaggCCGGGCCCgAAGAACGUUg -3' miRNA: 3'- caUAGCUg-------GGCUCGGGgUUCUUGCAG- -5' |
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24043 | 5' | -54.4 | NC_005262.1 | + | 36983 | 1.1 | 0.001264 |
Target: 5'- gGUAUCGACCCGAGCCCCAAGAACGUCg -3' miRNA: 3'- -CAUAGCUGGGCUCGGGGUUCUUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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