miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 17342 0.66 0.905076
Target:  5'- cGCAGCUCgaacaggCGCGUCuccuCGGC-CGAg -3'
miRNA:   3'- -CGUCGAGaua----GCGCAGcu--GUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 33328 0.66 0.905076
Target:  5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3'
miRNA:   3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 23687 0.66 0.905076
Target:  5'- aGCGGCgcgugugggUCUAccggCGCacgGUCGACcACGCGGc -3'
miRNA:   3'- -CGUCG---------AGAUa---GCG---CAGCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 35216 0.66 0.898234
Target:  5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3'
miRNA:   3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 33701 0.66 0.898234
Target:  5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3'
miRNA:   3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 43695 0.66 0.898234
Target:  5'- -gGGC-CgaauUCGCG-CGGCGACGCGc -3'
miRNA:   3'- cgUCGaGau--AGCGCaGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 9288 0.66 0.898234
Target:  5'- aGCAccCUCUGagUGCGaCGACAGCGUGGc -3'
miRNA:   3'- -CGUc-GAGAUa-GCGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 24819 0.66 0.898234
Target:  5'- cGCgAGCUCgcgAUCGCGgcCGGCGcCGUGc -3'
miRNA:   3'- -CG-UCGAGa--UAGCGCa-GCUGUuGCGCu -5'
24045 3' -52.5 NC_005262.1 + 7173 0.66 0.898234
Target:  5'- cGCAuGCcgCUAcCGCGUaauuGCGGCGCGAu -3'
miRNA:   3'- -CGU-CGa-GAUaGCGCAgc--UGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 54413 0.66 0.891124
Target:  5'- aGguGC-CgagCGCGUCGAUGACGUc- -3'
miRNA:   3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 29498 0.66 0.891124
Target:  5'- uGCuGCUCcucgaGCGUCG-CGAuCGCGAg -3'
miRNA:   3'- -CGuCGAGauag-CGCAGCuGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 31165 0.66 0.891124
Target:  5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3'
miRNA:   3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17634 0.66 0.891124
Target:  5'- cGCGGCUgccgcCUcgCGCG-CGACcGCGUGc -3'
miRNA:   3'- -CGUCGA-----GAuaGCGCaGCUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17603 0.66 0.891124
Target:  5'- cGCAGCgcgcggagCUGgaGCGcCaGCAGCGCGAg -3'
miRNA:   3'- -CGUCGa-------GAUagCGCaGcUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 43486 0.66 0.891124
Target:  5'- gGCGGCgaccgUCUA-CGCGgaCGGCAAgGCGGu -3'
miRNA:   3'- -CGUCG-----AGAUaGCGCa-GCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 63294 0.66 0.891124
Target:  5'- cCGGCUgCUGgcUCgGCGUCGACGuggaacacGCGCGc -3'
miRNA:   3'- cGUCGA-GAU--AG-CGCAGCUGU--------UGCGCu -5'
24045 3' -52.5 NC_005262.1 + 45729 0.66 0.883749
Target:  5'- aGCAGUUCggcAUCcCGUCcGACAucguucccgcgaACGCGAc -3'
miRNA:   3'- -CGUCGAGa--UAGcGCAG-CUGU------------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 34397 0.66 0.878431
Target:  5'- gGCGGCgaccgugccguUCGCGaacucgcuguccuUCGACAGCGCGc -3'
miRNA:   3'- -CGUCGagau-------AGCGC-------------AGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 12324 0.66 0.876114
Target:  5'- uGCGGCUCgugccgcagCGCG-CGGCGGCaGCa- -3'
miRNA:   3'- -CGUCGAGaua------GCGCaGCUGUUG-CGcu -5'
24045 3' -52.5 NC_005262.1 + 35206 0.66 0.876114
Target:  5'- cCAGC-CUAcgucCGCaaggaugcggagGUCGGCGGCGCGAu -3'
miRNA:   3'- cGUCGaGAUa---GCG------------CAGCUGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.