Results 81 - 98 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 36272 | 0.71 | 0.638133 |
Target: 5'- uGCAGaugCgugggCGCG-CGGCGACGCGAa -3' miRNA: 3'- -CGUCga-Gaua--GCGCaGCUGUUGCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 12973 | 0.71 | 0.649165 |
Target: 5'- --cGCUCg---GCGUCGACGAcCGCGAc -3' miRNA: 3'- cguCGAGauagCGCAGCUGUU-GCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 49875 | 0.71 | 0.661281 |
Target: 5'- aGCAGCUCagccggccggaaacgGUCGauuguCGUCGGCGACGaCGGg -3' miRNA: 3'- -CGUCGAGa--------------UAGC-----GCAGCUGUUGC-GCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 59248 | 0.72 | 0.594051 |
Target: 5'- aGCuGCUUcuUCGCGUCcuccaugcgcgcGGCGACGCGGc -3' miRNA: 3'- -CGuCGAGauAGCGCAG------------CUGUUGCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 11014 | 0.72 | 0.583089 |
Target: 5'- cGCGGCUCgaUGUCGa--CGACGAgGCGAa -3' miRNA: 3'- -CGUCGAG--AUAGCgcaGCUGUUgCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 17173 | 0.72 | 0.550481 |
Target: 5'- cGCGGCcCgc-CGCGUCGACgGGCGCGc -3' miRNA: 3'- -CGUCGaGauaGCGCAGCUG-UUGCGCu -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 26360 | 0.72 | 0.571078 |
Target: 5'- uGCGGUUCgagAUCGUGccgcgcaUCGAUGACGUGAa -3' miRNA: 3'- -CGUCGAGa--UAGCGC-------AGCUGUUGCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 60836 | 0.72 | 0.583089 |
Target: 5'- cCGGC-CUA-CGCGaUCGGCGugGCGAu -3' miRNA: 3'- cGUCGaGAUaGCGC-AGCUGUugCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 19300 | 0.72 | 0.605046 |
Target: 5'- cGCAGC-Cga-CGUGcUCGGCGAUGCGAg -3' miRNA: 3'- -CGUCGaGauaGCGC-AGCUGUUGCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 48548 | 0.72 | 0.550481 |
Target: 5'- cGCGGCUCgcgAUcCGCG-CGGCAuACGCGc -3' miRNA: 3'- -CGUCGAGa--UA-GCGCaGCUGU-UGCGCu -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 17450 | 0.73 | 0.529054 |
Target: 5'- gGCAgGUUCUugAUCGCGUCGAUcuucuCGCGGa -3' miRNA: 3'- -CGU-CGAGA--UAGCGCAGCUGuu---GCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 59096 | 0.73 | 0.518454 |
Target: 5'- cGCGGCUUgcagacgGUCgaaGCG-CGACGGCGCGGg -3' miRNA: 3'- -CGUCGAGa------UAG---CGCaGCUGUUGCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 15709 | 0.73 | 0.518454 |
Target: 5'- aGCAGCgCUAUgCGC-UCGACGugGCGc -3' miRNA: 3'- -CGUCGaGAUA-GCGcAGCUGUugCGCu -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 42914 | 0.73 | 0.518454 |
Target: 5'- -uGGCUCgucGUCGCGUCGucgucCGGCGCGc -3' miRNA: 3'- cgUCGAGa--UAGCGCAGCu----GUUGCGCu -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 48155 | 0.74 | 0.446962 |
Target: 5'- gGCGGCUC-GUCGCGgcaggugCGAcCGACGCGc -3' miRNA: 3'- -CGUCGAGaUAGCGCa------GCU-GUUGCGCu -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 53155 | 0.76 | 0.346772 |
Target: 5'- aGCAGCUUcgcgAUCGCGcCGGuCAGCGCGu -3' miRNA: 3'- -CGUCGAGa---UAGCGCaGCU-GUUGCGCu -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 37529 | 0.77 | 0.314546 |
Target: 5'- uGCGGCccaUC-AUCGCGUUGuCGACGCGAu -3' miRNA: 3'- -CGUCG---AGaUAGCGCAGCuGUUGCGCU- -5' |
|||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 37428 | 1.11 | 0.001809 |
Target: 5'- uGCAGCUCUAUCGCGUCGACAACGCGAu -3' miRNA: 3'- -CGUCGAGAUAGCGCAGCUGUUGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home