miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 37428 1.11 0.001809
Target:  5'- uGCAGCUCUAUCGCGUCGACAACGCGAu -3'
miRNA:   3'- -CGUCGAGAUAGCGCAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 37529 0.77 0.314546
Target:  5'- uGCGGCccaUC-AUCGCGUUGuCGACGCGAu -3'
miRNA:   3'- -CGUCG---AGaUAGCGCAGCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 53155 0.76 0.346772
Target:  5'- aGCAGCUUcgcgAUCGCGcCGGuCAGCGCGu -3'
miRNA:   3'- -CGUCGAGa---UAGCGCaGCU-GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 48155 0.74 0.446962
Target:  5'- gGCGGCUC-GUCGCGgcaggugCGAcCGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGCa------GCU-GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 15709 0.73 0.518454
Target:  5'- aGCAGCgCUAUgCGC-UCGACGugGCGc -3'
miRNA:   3'- -CGUCGaGAUA-GCGcAGCUGUugCGCu -5'
24045 3' -52.5 NC_005262.1 + 59096 0.73 0.518454
Target:  5'- cGCGGCUUgcagacgGUCgaaGCG-CGACGGCGCGGg -3'
miRNA:   3'- -CGUCGAGa------UAG---CGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 42914 0.73 0.518454
Target:  5'- -uGGCUCgucGUCGCGUCGucgucCGGCGCGc -3'
miRNA:   3'- cgUCGAGa--UAGCGCAGCu----GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17450 0.73 0.529054
Target:  5'- gGCAgGUUCUugAUCGCGUCGAUcuucuCGCGGa -3'
miRNA:   3'- -CGU-CGAGA--UAGCGCAGCUGuu---GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 48548 0.72 0.550481
Target:  5'- cGCGGCUCgcgAUcCGCG-CGGCAuACGCGc -3'
miRNA:   3'- -CGUCGAGa--UA-GCGCaGCUGU-UGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17173 0.72 0.550481
Target:  5'- cGCGGCcCgc-CGCGUCGACgGGCGCGc -3'
miRNA:   3'- -CGUCGaGauaGCGCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 26360 0.72 0.571078
Target:  5'- uGCGGUUCgagAUCGUGccgcgcaUCGAUGACGUGAa -3'
miRNA:   3'- -CGUCGAGa--UAGCGC-------AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 11014 0.72 0.583089
Target:  5'- cGCGGCUCgaUGUCGa--CGACGAgGCGAa -3'
miRNA:   3'- -CGUCGAG--AUAGCgcaGCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 60836 0.72 0.583089
Target:  5'- cCGGC-CUA-CGCGaUCGGCGugGCGAu -3'
miRNA:   3'- cGUCGaGAUaGCGC-AGCUGUugCGCU- -5'
24045 3' -52.5 NC_005262.1 + 59248 0.72 0.594051
Target:  5'- aGCuGCUUcuUCGCGUCcuccaugcgcgcGGCGACGCGGc -3'
miRNA:   3'- -CGuCGAGauAGCGCAG------------CUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 19300 0.72 0.605046
Target:  5'- cGCAGC-Cga-CGUGcUCGGCGAUGCGAg -3'
miRNA:   3'- -CGUCGaGauaGCGC-AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 11324 0.71 0.627097
Target:  5'- cGCAGCgCgaucGUCGCuGUCGAgcuCGGCGCGGc -3'
miRNA:   3'- -CGUCGaGa---UAGCG-CAGCU---GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 24345 0.71 0.638133
Target:  5'- uGCGGCUCU---GCGUCGGC-GCGCc- -3'
miRNA:   3'- -CGUCGAGAuagCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 36272 0.71 0.638133
Target:  5'- uGCAGaugCgugggCGCG-CGGCGACGCGAa -3'
miRNA:   3'- -CGUCga-Gaua--GCGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12973 0.71 0.649165
Target:  5'- --cGCUCg---GCGUCGACGAcCGCGAc -3'
miRNA:   3'- cguCGAGauagCGCAGCUGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58775 0.71 0.649165
Target:  5'- cCAGCUUguugCGCGcUCG-CAACGCGGg -3'
miRNA:   3'- cGUCGAGaua-GCGC-AGCuGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.