Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 49875 | 0.71 | 0.661281 |
Target: 5'- aGCAGCUCagccggccggaaacgGUCGauuguCGUCGGCGACGaCGGg -3' miRNA: 3'- -CGUCGAGa--------------UAGC-----GCAGCUGUUGC-GCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 30398 | 0.7 | 0.67117 |
Target: 5'- cGCAuCUCgcUCGCGgucugggccuugUCGACAGCGCGc -3' miRNA: 3'- -CGUcGAGauAGCGC------------AGCUGUUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 26153 | 0.7 | 0.682122 |
Target: 5'- gGguGCUCcaaCGCGUCGAgCAcgaguggcGCGCGAu -3' miRNA: 3'- -CguCGAGauaGCGCAGCU-GU--------UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6751 | 0.7 | 0.682122 |
Target: 5'- cGCcGCUCguggAUCGagGaCGGCGACGCGAu -3' miRNA: 3'- -CGuCGAGa---UAGCg-CaGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 30638 | 0.7 | 0.682122 |
Target: 5'- --cGCUCggcaagGUgccCGCGUCgGACAACGCGGa -3' miRNA: 3'- cguCGAGa-----UA---GCGCAG-CUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 37912 | 0.7 | 0.693026 |
Target: 5'- cGCgGGCUaUAUCGCGUgGACGauugGCGCGc -3' miRNA: 3'- -CG-UCGAgAUAGCGCAgCUGU----UGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 12208 | 0.7 | 0.693026 |
Target: 5'- cGCGGCgaUCUGcUCGCGcgcaCGGCGGCGCuGAu -3' miRNA: 3'- -CGUCG--AGAU-AGCGCa---GCUGUUGCG-CU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11517 | 0.7 | 0.703872 |
Target: 5'- cGCGGCg-UGUCGCGcaccuUCGGCGgcccgGCGCGGc -3' miRNA: 3'- -CGUCGagAUAGCGC-----AGCUGU-----UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 17228 | 0.7 | 0.714647 |
Target: 5'- aGCGGCUC-GUCGCGaucaacUCGGCcgaggaGACGCGc -3' miRNA: 3'- -CGUCGAGaUAGCGC------AGCUG------UUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6975 | 0.7 | 0.714647 |
Target: 5'- cGCGGCUCgaaaacgcgAUCGCGgcCGGCAuCGcCGAg -3' miRNA: 3'- -CGUCGAGa--------UAGCGCa-GCUGUuGC-GCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 55224 | 0.69 | 0.72534 |
Target: 5'- -gAGCUCgaggaauUCGCGUgCGAacuGCGCGAg -3' miRNA: 3'- cgUCGAGau-----AGCGCA-GCUgu-UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6418 | 0.69 | 0.72534 |
Target: 5'- aCAGCUUgcugAUCGUGUCGGCGuccuuCGUGu -3' miRNA: 3'- cGUCGAGa---UAGCGCAGCUGUu----GCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 10630 | 0.69 | 0.72534 |
Target: 5'- cGCGGC-CgGUCGCGUCGGCAuagcCGUu- -3' miRNA: 3'- -CGUCGaGaUAGCGCAGCUGUu---GCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 17045 | 0.69 | 0.72534 |
Target: 5'- aGCAGCUCcgcgagcucGUCGCG-CGcACGGCGcCGAu -3' miRNA: 3'- -CGUCGAGa--------UAGCGCaGC-UGUUGC-GCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 43977 | 0.69 | 0.73594 |
Target: 5'- -aGGCUCUG-CGCGU-GAUcGCGCGGg -3' miRNA: 3'- cgUCGAGAUaGCGCAgCUGuUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 20715 | 0.69 | 0.73594 |
Target: 5'- cGCAGCccaUCacgGUCGCGUCGcucgGCAGCuCGAc -3' miRNA: 3'- -CGUCG---AGa--UAGCGCAGC----UGUUGcGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 58877 | 0.69 | 0.744344 |
Target: 5'- cGCAGCcCg--CGCGUUGGCugcugccgcgcuGCGCGAu -3' miRNA: 3'- -CGUCGaGauaGCGCAGCUGu-----------UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 61151 | 0.69 | 0.746435 |
Target: 5'- cGCAGCag-AUCGCGgCGGCGG-GCGAg -3' miRNA: 3'- -CGUCGagaUAGCGCaGCUGUUgCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 55415 | 0.69 | 0.756813 |
Target: 5'- aGCAGCUCga--GCGcCGGCugGAgGCGAa -3' miRNA: 3'- -CGUCGAGauagCGCaGCUG--UUgCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6975 | 0.69 | 0.767063 |
Target: 5'- uGCAGCUCgaAUCGgugaaGUaCGGCGACGCu- -3' miRNA: 3'- -CGUCGAGa-UAGCg----CA-GCUGUUGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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