miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 6975 0.69 0.767063
Target:  5'- uGCAGCUCgaAUCGgugaaGUaCGGCGACGCu- -3'
miRNA:   3'- -CGUCGAGa-UAGCg----CA-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 40354 0.69 0.767063
Target:  5'- gGCGcGCUgaUGUCGauCGUCGGCGACGuCGAc -3'
miRNA:   3'- -CGU-CGAg-AUAGC--GCAGCUGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 44451 0.69 0.771125
Target:  5'- aGguGCUCgucgaacuucagCGCGUCGACGuucuuUGCGGg -3'
miRNA:   3'- -CguCGAGaua---------GCGCAGCUGUu----GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 50469 0.68 0.777173
Target:  5'- cGCGGUUCgcGUCGCcacgGUCGACgAAUGCGc -3'
miRNA:   3'- -CGUCGAGa-UAGCG----CAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 51357 0.68 0.777173
Target:  5'- uGCAGCUCggcaccgCGcCGUCcGCGACGCc- -3'
miRNA:   3'- -CGUCGAGaua----GC-GCAGcUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 51958 0.68 0.777173
Target:  5'- uCGGCUCggucgugcUCGCGUCGuucGCGGCGCc- -3'
miRNA:   3'- cGUCGAGau------AGCGCAGC---UGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 54105 0.68 0.787133
Target:  5'- cGCuGCUgCgccUCGaCGUCGACGGCGCc- -3'
miRNA:   3'- -CGuCGA-Gau-AGC-GCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 51463 0.68 0.796931
Target:  5'- cGCGGC-CUuggccggcGUCGCG--GACGGCGCGGu -3'
miRNA:   3'- -CGUCGaGA--------UAGCGCagCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 42167 0.68 0.796931
Target:  5'- cGCGGCcgaucgUCUGUaCGUGaugggCGACGGCGCGc -3'
miRNA:   3'- -CGUCG------AGAUA-GCGCa----GCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 56530 0.68 0.796931
Target:  5'- cGUGGUUCccggcAUC-CGUCGAgCAGCGCGAg -3'
miRNA:   3'- -CGUCGAGa----UAGcGCAGCU-GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 30244 0.68 0.805601
Target:  5'- uCAGCU---UCGCGUCGGCAuccgccgGCGCu- -3'
miRNA:   3'- cGUCGAgauAGCGCAGCUGU-------UGCGcu -5'
24045 3' -52.5 NC_005262.1 + 4561 0.68 0.806555
Target:  5'- cGCGGCgcaUCUcgCGCcagCGGCGGCGCu- -3'
miRNA:   3'- -CGUCG---AGAuaGCGca-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 24820 0.68 0.815995
Target:  5'- cGCAcGC-CgAUCGCGcgCGcCAGCGCGAu -3'
miRNA:   3'- -CGU-CGaGaUAGCGCa-GCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 61724 0.68 0.815995
Target:  5'- gGCGcGCUCUGcuuacuucgcCGCGUCGugGAUGCu- -3'
miRNA:   3'- -CGU-CGAGAUa---------GCGCAGCugUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 15144 0.68 0.815995
Target:  5'- cGCGGC-Cg---GCGUCGAguCGGCGCGGa -3'
miRNA:   3'- -CGUCGaGauagCGCAGCU--GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12359 0.68 0.819718
Target:  5'- uCGGCUCgccggcCGCGaUCGACAggugcccgaccaucgACGCGAc -3'
miRNA:   3'- cGUCGAGaua---GCGC-AGCUGU---------------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 21514 0.68 0.825242
Target:  5'- cCAGCUCg--CGgaCGUCGGCcguCGCGAg -3'
miRNA:   3'- cGUCGAGauaGC--GCAGCUGuu-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 56226 0.68 0.825242
Target:  5'- uCAGCUUgcuguUCGgGUCGcuCGGCGCGGu -3'
miRNA:   3'- cGUCGAGau---AGCgCAGCu-GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 71 0.68 0.825242
Target:  5'- cGCGGCUCg--CGaagaaGUCGGCcGCGCc- -3'
miRNA:   3'- -CGUCGAGauaGCg----CAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 11582 0.68 0.825242
Target:  5'- uGCAGC-Cga--GC-UCGGCGACGCGGc -3'
miRNA:   3'- -CGUCGaGauagCGcAGCUGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.