Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 34397 | 0.66 | 0.878431 |
Target: 5'- gGCGGCgaccgugccguUCGCGaacucgcuguccuUCGACAGCGCGc -3' miRNA: 3'- -CGUCGagau-------AGCGC-------------AGCUGUUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 45729 | 0.66 | 0.883749 |
Target: 5'- aGCAGUUCggcAUCcCGUCcGACAucguucccgcgaACGCGAc -3' miRNA: 3'- -CGUCGAGa--UAGcGCAG-CUGU------------UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 17603 | 0.66 | 0.891124 |
Target: 5'- cGCAGCgcgcggagCUGgaGCGcCaGCAGCGCGAg -3' miRNA: 3'- -CGUCGa-------GAUagCGCaGcUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 43486 | 0.66 | 0.891124 |
Target: 5'- gGCGGCgaccgUCUA-CGCGgaCGGCAAgGCGGu -3' miRNA: 3'- -CGUCG-----AGAUaGCGCa-GCUGUUgCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 63294 | 0.66 | 0.891124 |
Target: 5'- cCGGCUgCUGgcUCgGCGUCGACGuggaacacGCGCGc -3' miRNA: 3'- cGUCGA-GAU--AG-CGCAGCUGU--------UGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 31165 | 0.66 | 0.891124 |
Target: 5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3' miRNA: 3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 54413 | 0.66 | 0.891124 |
Target: 5'- aGguGC-CgagCGCGUCGAUGACGUc- -3' miRNA: 3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 29498 | 0.66 | 0.891124 |
Target: 5'- uGCuGCUCcucgaGCGUCG-CGAuCGCGAg -3' miRNA: 3'- -CGuCGAGauag-CGCAGCuGUU-GCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 17634 | 0.66 | 0.891124 |
Target: 5'- cGCGGCUgccgcCUcgCGCG-CGACcGCGUGc -3' miRNA: 3'- -CGUCGA-----GAuaGCGCaGCUGuUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 35216 | 0.66 | 0.898234 |
Target: 5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3' miRNA: 3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 7173 | 0.66 | 0.898234 |
Target: 5'- cGCAuGCcgCUAcCGCGUaauuGCGGCGCGAu -3' miRNA: 3'- -CGU-CGa-GAUaGCGCAgc--UGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 9288 | 0.66 | 0.898234 |
Target: 5'- aGCAccCUCUGagUGCGaCGACAGCGUGGc -3' miRNA: 3'- -CGUc-GAGAUa-GCGCaGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 33701 | 0.66 | 0.898234 |
Target: 5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3' miRNA: 3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 24819 | 0.66 | 0.898234 |
Target: 5'- cGCgAGCUCgcgAUCGCGgcCGGCGcCGUGc -3' miRNA: 3'- -CG-UCGAGa--UAGCGCa-GCUGUuGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 43695 | 0.66 | 0.898234 |
Target: 5'- -gGGC-CgaauUCGCG-CGGCGACGCGc -3' miRNA: 3'- cgUCGaGau--AGCGCaGCUGUUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 23687 | 0.66 | 0.905076 |
Target: 5'- aGCGGCgcgugugggUCUAccggCGCacgGUCGACcACGCGGc -3' miRNA: 3'- -CGUCG---------AGAUa---GCG---CAGCUGuUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 17342 | 0.66 | 0.905076 |
Target: 5'- cGCAGCUCgaacaggCGCGUCuccuCGGC-CGAg -3' miRNA: 3'- -CGUCGAGaua----GCGCAGcu--GUUGcGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 33328 | 0.66 | 0.905076 |
Target: 5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3' miRNA: 3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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