miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 71 0.68 0.825242
Target:  5'- cGCGGCUCg--CGaagaaGUCGGCcGCGCc- -3'
miRNA:   3'- -CGUCGAGauaGCg----CAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 4561 0.68 0.806555
Target:  5'- cGCGGCgcaUCUcgCGCcagCGGCGGCGCu- -3'
miRNA:   3'- -CGUCG---AGAuaGCGca-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 5389 0.66 0.876114
Target:  5'- cCAGCUCcgacCGCcUCGACcGCGUGAu -3'
miRNA:   3'- cGUCGAGaua-GCGcAGCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 6418 0.69 0.72534
Target:  5'- aCAGCUUgcugAUCGUGUCGGCGuccuuCGUGu -3'
miRNA:   3'- cGUCGAGa---UAGCGCAGCUGUu----GCGCu -5'
24045 3' -52.5 NC_005262.1 + 6751 0.7 0.682122
Target:  5'- cGCcGCUCguggAUCGagGaCGGCGACGCGAu -3'
miRNA:   3'- -CGuCGAGa---UAGCg-CaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 6975 0.7 0.714647
Target:  5'- cGCGGCUCgaaaacgcgAUCGCGgcCGGCAuCGcCGAg -3'
miRNA:   3'- -CGUCGAGa--------UAGCGCa-GCUGUuGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 6975 0.69 0.767063
Target:  5'- uGCAGCUCgaAUCGgugaaGUaCGGCGACGCu- -3'
miRNA:   3'- -CGUCGAGa-UAGCg----CA-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 7173 0.66 0.898234
Target:  5'- cGCAuGCcgCUAcCGCGUaauuGCGGCGCGAu -3'
miRNA:   3'- -CGU-CGa-GAUaGCGCAgc--UGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 7527 0.67 0.868226
Target:  5'- gGCAgGUUCggcggCGCGUCGGC-GCGCu- -3'
miRNA:   3'- -CGU-CGAGaua--GCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 9288 0.66 0.898234
Target:  5'- aGCAccCUCUGagUGCGaCGACAGCGUGGc -3'
miRNA:   3'- -CGUc-GAGAUa-GCGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 10630 0.69 0.72534
Target:  5'- cGCGGC-CgGUCGCGUCGGCAuagcCGUu- -3'
miRNA:   3'- -CGUCGaGaUAGCGCAGCUGUu---GCGcu -5'
24045 3' -52.5 NC_005262.1 + 11014 0.72 0.583089
Target:  5'- cGCGGCUCgaUGUCGa--CGACGAgGCGAa -3'
miRNA:   3'- -CGUCGAG--AUAGCgcaGCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 11024 0.67 0.860092
Target:  5'- gGCGGCU--GUCGCGcaaGACcGCGCGc -3'
miRNA:   3'- -CGUCGAgaUAGCGCag-CUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 11146 0.67 0.855095
Target:  5'- cGUGGCUCcgGUCGCacgggcggcccugCGACAACGCcGAc -3'
miRNA:   3'- -CGUCGAGa-UAGCGca-----------GCUGUUGCG-CU- -5'
24045 3' -52.5 NC_005262.1 + 11324 0.71 0.627097
Target:  5'- cGCAGCgCgaucGUCGCuGUCGAgcuCGGCGCGGc -3'
miRNA:   3'- -CGUCGaGa---UAGCG-CAGCU---GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 11517 0.7 0.703872
Target:  5'- cGCGGCg-UGUCGCGcaccuUCGGCGgcccgGCGCGGc -3'
miRNA:   3'- -CGUCGagAUAGCGC-----AGCUGU-----UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 11582 0.68 0.825242
Target:  5'- uGCAGC-Cga--GC-UCGGCGACGCGGc -3'
miRNA:   3'- -CGUCGaGauagCGcAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12208 0.7 0.693026
Target:  5'- cGCGGCgaUCUGcUCGCGcgcaCGGCGGCGCuGAu -3'
miRNA:   3'- -CGUCG--AGAU-AGCGCa---GCUGUUGCG-CU- -5'
24045 3' -52.5 NC_005262.1 + 12324 0.66 0.876114
Target:  5'- uGCGGCUCgugccgcagCGCG-CGGCGGCaGCa- -3'
miRNA:   3'- -CGUCGAGaua------GCGCaGCUGUUG-CGcu -5'
24045 3' -52.5 NC_005262.1 + 12359 0.68 0.819718
Target:  5'- uCGGCUCgccggcCGCGaUCGACAggugcccgaccaucgACGCGAc -3'
miRNA:   3'- cGUCGAGaua---GCGC-AGCUGU---------------UGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.