miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 26153 0.7 0.682122
Target:  5'- gGguGCUCcaaCGCGUCGAgCAcgaguggcGCGCGAu -3'
miRNA:   3'- -CguCGAGauaGCGCAGCU-GU--------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 26360 0.72 0.571078
Target:  5'- uGCGGUUCgagAUCGUGccgcgcaUCGAUGACGUGAa -3'
miRNA:   3'- -CGUCGAGa--UAGCGC-------AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 27002 0.67 0.833389
Target:  5'- cCGGCUCgggaucGUCGCGcggaugaUCGACAACG-GAc -3'
miRNA:   3'- cGUCGAGa-----UAGCGC-------AGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 29498 0.66 0.891124
Target:  5'- uGCuGCUCcucgaGCGUCG-CGAuCGCGAg -3'
miRNA:   3'- -CGuCGAGauag-CGCAGCuGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 30244 0.68 0.805601
Target:  5'- uCAGCU---UCGCGUCGGCAuccgccgGCGCu- -3'
miRNA:   3'- cGUCGAgauAGCGCAGCUGU-------UGCGcu -5'
24045 3' -52.5 NC_005262.1 + 30398 0.7 0.67117
Target:  5'- cGCAuCUCgcUCGCGgucugggccuugUCGACAGCGCGc -3'
miRNA:   3'- -CGUcGAGauAGCGC------------AGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 30638 0.7 0.682122
Target:  5'- --cGCUCggcaagGUgccCGCGUCgGACAACGCGGa -3'
miRNA:   3'- cguCGAGa-----UA---GCGCAG-CUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 31165 0.66 0.891124
Target:  5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3'
miRNA:   3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 31288 0.67 0.851718
Target:  5'- cGCGGCcaagAUCGCGgCGACAAUGgGu -3'
miRNA:   3'- -CGUCGaga-UAGCGCaGCUGUUGCgCu -5'
24045 3' -52.5 NC_005262.1 + 33328 0.66 0.905076
Target:  5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3'
miRNA:   3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 33701 0.66 0.898234
Target:  5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3'
miRNA:   3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 34397 0.66 0.878431
Target:  5'- gGCGGCgaccgugccguUCGCGaacucgcuguccuUCGACAGCGCGc -3'
miRNA:   3'- -CGUCGagau-------AGCGC-------------AGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 35206 0.66 0.876114
Target:  5'- cCAGC-CUAcgucCGCaaggaugcggagGUCGGCGGCGCGAu -3'
miRNA:   3'- cGUCGaGAUa---GCG------------CAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 35216 0.66 0.898234
Target:  5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3'
miRNA:   3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 36272 0.71 0.638133
Target:  5'- uGCAGaugCgugggCGCG-CGGCGACGCGAa -3'
miRNA:   3'- -CGUCga-Gaua--GCGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 37428 1.11 0.001809
Target:  5'- uGCAGCUCUAUCGCGUCGACAACGCGAu -3'
miRNA:   3'- -CGUCGAGAUAGCGCAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 37529 0.77 0.314546
Target:  5'- uGCGGCccaUC-AUCGCGUUGuCGACGCGAu -3'
miRNA:   3'- -CGUCG---AGaUAGCGCAGCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 37912 0.7 0.693026
Target:  5'- cGCgGGCUaUAUCGCGUgGACGauugGCGCGc -3'
miRNA:   3'- -CG-UCGAgAUAGCGCAgCUGU----UGCGCu -5'
24045 3' -52.5 NC_005262.1 + 38907 0.67 0.843112
Target:  5'- cGCAGUauuUCUugcGUCGCGcagaUCGAUGGCGCu- -3'
miRNA:   3'- -CGUCG---AGA---UAGCGC----AGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 40354 0.69 0.767063
Target:  5'- gGCGcGCUgaUGUCGauCGUCGGCGACGuCGAc -3'
miRNA:   3'- -CGU-CGAg-AUAGC--GCAGCUGUUGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.