miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 40413 0.66 0.876114
Target:  5'- uCAGC-Cg--CGCGUCGGCGACcUGAa -3'
miRNA:   3'- cGUCGaGauaGCGCAGCUGUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 40549 0.67 0.834284
Target:  5'- gGCGGCUCUuaCGCGcCGgGCAACaccgGCGGu -3'
miRNA:   3'- -CGUCGAGAuaGCGCaGC-UGUUG----CGCU- -5'
24045 3' -52.5 NC_005262.1 + 40682 0.67 0.843112
Target:  5'- uGCGGCaUCUG-CGCcacCGuCAGCGCGAc -3'
miRNA:   3'- -CGUCG-AGAUaGCGca-GCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 41663 0.67 0.843112
Target:  5'- aGUAGUUCgaguaCGUGUUGugGGCGUGGc -3'
miRNA:   3'- -CGUCGAGaua--GCGCAGCugUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 42167 0.68 0.796931
Target:  5'- cGCGGCcgaucgUCUGUaCGUGaugggCGACGGCGCGc -3'
miRNA:   3'- -CGUCG------AGAUA-GCGCa----GCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 42914 0.73 0.518454
Target:  5'- -uGGCUCgucGUCGCGUCGucgucCGGCGCGc -3'
miRNA:   3'- cgUCGAGa--UAGCGCAGCu----GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 43486 0.66 0.891124
Target:  5'- gGCGGCgaccgUCUA-CGCGgaCGGCAAgGCGGu -3'
miRNA:   3'- -CGUCG-----AGAUaGCGCa-GCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 43695 0.66 0.898234
Target:  5'- -gGGC-CgaauUCGCG-CGGCGACGCGc -3'
miRNA:   3'- cgUCGaGau--AGCGCaGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 43977 0.69 0.73594
Target:  5'- -aGGCUCUG-CGCGU-GAUcGCGCGGg -3'
miRNA:   3'- cgUCGAGAUaGCGCAgCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 44451 0.69 0.771125
Target:  5'- aGguGCUCgucgaacuucagCGCGUCGACGuucuuUGCGGg -3'
miRNA:   3'- -CguCGAGaua---------GCGCAGCUGUu----GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 45729 0.66 0.883749
Target:  5'- aGCAGUUCggcAUCcCGUCcGACAucguucccgcgaACGCGAc -3'
miRNA:   3'- -CGUCGAGa--UAGcGCAG-CUGU------------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 46690 0.66 0.876114
Target:  5'- gGCGGgaUCUGUgGCGUCugcggcgagGACGGCGCu- -3'
miRNA:   3'- -CGUCg-AGAUAgCGCAG---------CUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 47235 0.67 0.860092
Target:  5'- cGCGcCUCgccgGUCGCGUCGACcuugagcuuGACGuUGAa -3'
miRNA:   3'- -CGUcGAGa---UAGCGCAGCUG---------UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 48155 0.74 0.446962
Target:  5'- gGCGGCUC-GUCGCGgcaggugCGAcCGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGCa------GCU-GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 48548 0.72 0.550481
Target:  5'- cGCGGCUCgcgAUcCGCG-CGGCAuACGCGc -3'
miRNA:   3'- -CGUCGAGa--UA-GCGCaGCUGU-UGCGCu -5'
24045 3' -52.5 NC_005262.1 + 49875 0.71 0.661281
Target:  5'- aGCAGCUCagccggccggaaacgGUCGauuguCGUCGGCGACGaCGGg -3'
miRNA:   3'- -CGUCGAGa--------------UAGC-----GCAGCUGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 50370 0.67 0.843112
Target:  5'- aGCGGCgcauUCGuCGaccgUGGCGACGCGAa -3'
miRNA:   3'- -CGUCGagauAGC-GCa---GCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 50469 0.68 0.777173
Target:  5'- cGCGGUUCgcGUCGCcacgGUCGACgAAUGCGc -3'
miRNA:   3'- -CGUCGAGa-UAGCG----CAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 50538 0.66 0.876114
Target:  5'- uGCGGCcguccucCUcgCGCGgcaCGACGACGUGc -3'
miRNA:   3'- -CGUCGa------GAuaGCGCa--GCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 51357 0.68 0.777173
Target:  5'- uGCAGCUCggcaccgCGcCGUCcGCGACGCc- -3'
miRNA:   3'- -CGUCGAGaua----GC-GCAGcUGUUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.