miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 51463 0.68 0.796931
Target:  5'- cGCGGC-CUuggccggcGUCGCG--GACGGCGCGGu -3'
miRNA:   3'- -CGUCGaGA--------UAGCGCagCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 51958 0.68 0.777173
Target:  5'- uCGGCUCggucgugcUCGCGUCGuucGCGGCGCc- -3'
miRNA:   3'- cGUCGAGau------AGCGCAGC---UGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 53155 0.76 0.346772
Target:  5'- aGCAGCUUcgcgAUCGCGcCGGuCAGCGCGu -3'
miRNA:   3'- -CGUCGAGa---UAGCGCaGCU-GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 54105 0.68 0.787133
Target:  5'- cGCuGCUgCgccUCGaCGUCGACGGCGCc- -3'
miRNA:   3'- -CGuCGA-Gau-AGC-GCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 54413 0.66 0.891124
Target:  5'- aGguGC-CgagCGCGUCGAUGACGUc- -3'
miRNA:   3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 55224 0.69 0.72534
Target:  5'- -gAGCUCgaggaauUCGCGUgCGAacuGCGCGAg -3'
miRNA:   3'- cgUCGAGau-----AGCGCA-GCUgu-UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 55415 0.69 0.756813
Target:  5'- aGCAGCUCga--GCGcCGGCugGAgGCGAa -3'
miRNA:   3'- -CGUCGAGauagCGCaGCUG--UUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 56226 0.68 0.825242
Target:  5'- uCAGCUUgcuguUCGgGUCGcuCGGCGCGGu -3'
miRNA:   3'- cGUCGAGau---AGCgCAGCu-GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 56530 0.68 0.796931
Target:  5'- cGUGGUUCccggcAUC-CGUCGAgCAGCGCGAg -3'
miRNA:   3'- -CGUCGAGa----UAGcGCAGCU-GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58775 0.71 0.649165
Target:  5'- cCAGCUUguugCGCGcUCG-CAACGCGGg -3'
miRNA:   3'- cGUCGAGaua-GCGC-AGCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58785 0.67 0.860092
Target:  5'- cGC-GUUCcggCGCuggGUCGACGACGUGAu -3'
miRNA:   3'- -CGuCGAGauaGCG---CAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58877 0.69 0.744344
Target:  5'- cGCAGCcCg--CGCGUUGGCugcugccgcgcuGCGCGAu -3'
miRNA:   3'- -CGUCGaGauaGCGCAGCUGu-----------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 59096 0.73 0.518454
Target:  5'- cGCGGCUUgcagacgGUCgaaGCG-CGACGGCGCGGg -3'
miRNA:   3'- -CGUCGAGa------UAG---CGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 59248 0.72 0.594051
Target:  5'- aGCuGCUUcuUCGCGUCcuccaugcgcgcGGCGACGCGGc -3'
miRNA:   3'- -CGuCGAGauAGCGCAG------------CUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 60836 0.72 0.583089
Target:  5'- cCGGC-CUA-CGCGaUCGGCGugGCGAu -3'
miRNA:   3'- cGUCGaGAUaGCGC-AGCUGUugCGCU- -5'
24045 3' -52.5 NC_005262.1 + 61151 0.69 0.746435
Target:  5'- cGCAGCag-AUCGCGgCGGCGG-GCGAg -3'
miRNA:   3'- -CGUCGagaUAGCGCaGCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 61724 0.68 0.815995
Target:  5'- gGCGcGCUCUGcuuacuucgcCGCGUCGugGAUGCu- -3'
miRNA:   3'- -CGU-CGAGAUa---------GCGCAGCugUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 63294 0.66 0.891124
Target:  5'- cCGGCUgCUGgcUCgGCGUCGACGuggaacacGCGCGc -3'
miRNA:   3'- cGUCGA-GAU--AG-CGCAGCUGU--------UGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.