miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 24373 0.67 0.868226
Target:  5'- gGCGGCgagcGUCGCGcCGAUuGCuGCGAa -3'
miRNA:   3'- -CGUCGaga-UAGCGCaGCUGuUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 24345 0.71 0.638133
Target:  5'- uGCGGCUCU---GCGUCGGC-GCGCc- -3'
miRNA:   3'- -CGUCGAGAuagCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 23687 0.66 0.905076
Target:  5'- aGCGGCgcgugugggUCUAccggCGCacgGUCGACcACGCGGc -3'
miRNA:   3'- -CGUCG---------AGAUa---GCG---CAGCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 22188 0.67 0.868226
Target:  5'- uGCAGCag-GUCGaCGUUGACcGCGUGc -3'
miRNA:   3'- -CGUCGagaUAGC-GCAGCUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 21514 0.68 0.825242
Target:  5'- cCAGCUCg--CGgaCGUCGGCcguCGCGAg -3'
miRNA:   3'- cGUCGAGauaGC--GCAGCUGuu-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 20715 0.69 0.73594
Target:  5'- cGCAGCccaUCacgGUCGCGUCGcucgGCAGCuCGAc -3'
miRNA:   3'- -CGUCG---AGa--UAGCGCAGC----UGUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 19300 0.72 0.605046
Target:  5'- cGCAGC-Cga-CGUGcUCGGCGAUGCGAg -3'
miRNA:   3'- -CGUCGaGauaGCGC-AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 18746 0.69 0.767063
Target:  5'- cGCGGCUCgg-CGCGUCGuagaugucguAgAACGCu- -3'
miRNA:   3'- -CGUCGAGauaGCGCAGC----------UgUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 17634 0.66 0.891124
Target:  5'- cGCGGCUgccgcCUcgCGCG-CGACcGCGUGc -3'
miRNA:   3'- -CGUCGA-----GAuaGCGCaGCUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17603 0.66 0.891124
Target:  5'- cGCAGCgcgcggagCUGgaGCGcCaGCAGCGCGAg -3'
miRNA:   3'- -CGUCGa-------GAUagCGCaGcUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 17450 0.73 0.529054
Target:  5'- gGCAgGUUCUugAUCGCGUCGAUcuucuCGCGGa -3'
miRNA:   3'- -CGU-CGAGA--UAGCGCAGCUGuu---GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 17342 0.66 0.905076
Target:  5'- cGCAGCUCgaacaggCGCGUCuccuCGGC-CGAg -3'
miRNA:   3'- -CGUCGAGaua----GCGCAGcu--GUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 17228 0.7 0.714647
Target:  5'- aGCGGCUC-GUCGCGaucaacUCGGCcgaggaGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGC------AGCUG------UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17173 0.72 0.550481
Target:  5'- cGCGGCcCgc-CGCGUCGACgGGCGCGc -3'
miRNA:   3'- -CGUCGaGauaGCGCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17045 0.69 0.72534
Target:  5'- aGCAGCUCcgcgagcucGUCGCG-CGcACGGCGcCGAu -3'
miRNA:   3'- -CGUCGAGa--------UAGCGCaGC-UGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 15709 0.73 0.518454
Target:  5'- aGCAGCgCUAUgCGC-UCGACGugGCGc -3'
miRNA:   3'- -CGUCGaGAUA-GCGcAGCUGUugCGCu -5'
24045 3' -52.5 NC_005262.1 + 15144 0.68 0.815995
Target:  5'- cGCGGC-Cg---GCGUCGAguCGGCGCGGa -3'
miRNA:   3'- -CGUCGaGauagCGCAGCU--GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12973 0.71 0.649165
Target:  5'- --cGCUCg---GCGUCGACGAcCGCGAc -3'
miRNA:   3'- cguCGAGauagCGCAGCUGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12359 0.68 0.819718
Target:  5'- uCGGCUCgccggcCGCGaUCGACAggugcccgaccaucgACGCGAc -3'
miRNA:   3'- cGUCGAGaua---GCGC-AGCUGU---------------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12324 0.66 0.876114
Target:  5'- uGCGGCUCgugccgcagCGCG-CGGCGGCaGCa- -3'
miRNA:   3'- -CGUCGAGaua------GCGCaGCUGUUG-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.