Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 12208 | 0.7 | 0.693026 |
Target: 5'- cGCGGCgaUCUGcUCGCGcgcaCGGCGGCGCuGAu -3' miRNA: 3'- -CGUCG--AGAU-AGCGCa---GCUGUUGCG-CU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11582 | 0.68 | 0.825242 |
Target: 5'- uGCAGC-Cga--GC-UCGGCGACGCGGc -3' miRNA: 3'- -CGUCGaGauagCGcAGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11517 | 0.7 | 0.703872 |
Target: 5'- cGCGGCg-UGUCGCGcaccuUCGGCGgcccgGCGCGGc -3' miRNA: 3'- -CGUCGagAUAGCGC-----AGCUGU-----UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11324 | 0.71 | 0.627097 |
Target: 5'- cGCAGCgCgaucGUCGCuGUCGAgcuCGGCGCGGc -3' miRNA: 3'- -CGUCGaGa---UAGCG-CAGCU---GUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11146 | 0.67 | 0.855095 |
Target: 5'- cGUGGCUCcgGUCGCacgggcggcccugCGACAACGCcGAc -3' miRNA: 3'- -CGUCGAGa-UAGCGca-----------GCUGUUGCG-CU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11024 | 0.67 | 0.860092 |
Target: 5'- gGCGGCU--GUCGCGcaaGACcGCGCGc -3' miRNA: 3'- -CGUCGAgaUAGCGCag-CUGuUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11014 | 0.72 | 0.583089 |
Target: 5'- cGCGGCUCgaUGUCGa--CGACGAgGCGAa -3' miRNA: 3'- -CGUCGAG--AUAGCgcaGCUGUUgCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 10630 | 0.69 | 0.72534 |
Target: 5'- cGCGGC-CgGUCGCGUCGGCAuagcCGUu- -3' miRNA: 3'- -CGUCGaGaUAGCGCAGCUGUu---GCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 9288 | 0.66 | 0.898234 |
Target: 5'- aGCAccCUCUGagUGCGaCGACAGCGUGGc -3' miRNA: 3'- -CGUc-GAGAUa-GCGCaGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 7527 | 0.67 | 0.868226 |
Target: 5'- gGCAgGUUCggcggCGCGUCGGC-GCGCu- -3' miRNA: 3'- -CGU-CGAGaua--GCGCAGCUGuUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 7173 | 0.66 | 0.898234 |
Target: 5'- cGCAuGCcgCUAcCGCGUaauuGCGGCGCGAu -3' miRNA: 3'- -CGU-CGa-GAUaGCGCAgc--UGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6975 | 0.69 | 0.767063 |
Target: 5'- uGCAGCUCgaAUCGgugaaGUaCGGCGACGCu- -3' miRNA: 3'- -CGUCGAGa-UAGCg----CA-GCUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6975 | 0.7 | 0.714647 |
Target: 5'- cGCGGCUCgaaaacgcgAUCGCGgcCGGCAuCGcCGAg -3' miRNA: 3'- -CGUCGAGa--------UAGCGCa-GCUGUuGC-GCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6751 | 0.7 | 0.682122 |
Target: 5'- cGCcGCUCguggAUCGagGaCGGCGACGCGAu -3' miRNA: 3'- -CGuCGAGa---UAGCg-CaGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 6418 | 0.69 | 0.72534 |
Target: 5'- aCAGCUUgcugAUCGUGUCGGCGuccuuCGUGu -3' miRNA: 3'- cGUCGAGa---UAGCGCAGCUGUu----GCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 5389 | 0.66 | 0.876114 |
Target: 5'- cCAGCUCcgacCGCcUCGACcGCGUGAu -3' miRNA: 3'- cGUCGAGaua-GCGcAGCUGuUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 4561 | 0.68 | 0.806555 |
Target: 5'- cGCGGCgcaUCUcgCGCcagCGGCGGCGCu- -3' miRNA: 3'- -CGUCG---AGAuaGCGca-GCUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 71 | 0.68 | 0.825242 |
Target: 5'- cGCGGCUCg--CGaagaaGUCGGCcGCGCc- -3' miRNA: 3'- -CGUCGAGauaGCg----CAGCUGuUGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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