miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 55415 0.69 0.756813
Target:  5'- aGCAGCUCga--GCGcCGGCugGAgGCGAa -3'
miRNA:   3'- -CGUCGAGauagCGCaGCUG--UUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 61151 0.69 0.746435
Target:  5'- cGCAGCag-AUCGCGgCGGCGG-GCGAg -3'
miRNA:   3'- -CGUCGagaUAGCGCaGCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12973 0.71 0.649165
Target:  5'- --cGCUCg---GCGUCGACGAcCGCGAc -3'
miRNA:   3'- cguCGAGauagCGCAGCUGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 36272 0.71 0.638133
Target:  5'- uGCAGaugCgugggCGCG-CGGCGACGCGAa -3'
miRNA:   3'- -CGUCga-Gaua--GCGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 24345 0.71 0.638133
Target:  5'- uGCGGCUCU---GCGUCGGC-GCGCc- -3'
miRNA:   3'- -CGUCGAGAuagCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 19300 0.72 0.605046
Target:  5'- cGCAGC-Cga-CGUGcUCGGCGAUGCGAg -3'
miRNA:   3'- -CGUCGaGauaGCGC-AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 60836 0.72 0.583089
Target:  5'- cCGGC-CUA-CGCGaUCGGCGugGCGAu -3'
miRNA:   3'- cGUCGaGAUaGCGC-AGCUGUugCGCU- -5'
24045 3' -52.5 NC_005262.1 + 26360 0.72 0.571078
Target:  5'- uGCGGUUCgagAUCGUGccgcgcaUCGAUGACGUGAa -3'
miRNA:   3'- -CGUCGAGa--UAGCGC-------AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 42914 0.73 0.518454
Target:  5'- -uGGCUCgucGUCGCGUCGucgucCGGCGCGc -3'
miRNA:   3'- cgUCGAGa--UAGCGCAGCu----GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 15709 0.73 0.518454
Target:  5'- aGCAGCgCUAUgCGC-UCGACGugGCGc -3'
miRNA:   3'- -CGUCGaGAUA-GCGcAGCUGUugCGCu -5'
24045 3' -52.5 NC_005262.1 + 49875 0.71 0.661281
Target:  5'- aGCAGCUCagccggccggaaacgGUCGauuguCGUCGGCGACGaCGGg -3'
miRNA:   3'- -CGUCGAGa--------------UAGC-----GCAGCUGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 26153 0.7 0.682122
Target:  5'- gGguGCUCcaaCGCGUCGAgCAcgaguggcGCGCGAu -3'
miRNA:   3'- -CguCGAGauaGCGCAGCU-GU--------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58877 0.69 0.744344
Target:  5'- cGCAGCcCg--CGCGUUGGCugcugccgcgcuGCGCGAu -3'
miRNA:   3'- -CGUCGaGauaGCGCAGCUGu-----------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 20715 0.69 0.73594
Target:  5'- cGCAGCccaUCacgGUCGCGUCGcucgGCAGCuCGAc -3'
miRNA:   3'- -CGUCG---AGa--UAGCGCAGC----UGUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 43977 0.69 0.73594
Target:  5'- -aGGCUCUG-CGCGU-GAUcGCGCGGg -3'
miRNA:   3'- cgUCGAGAUaGCGCAgCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 17045 0.69 0.72534
Target:  5'- aGCAGCUCcgcgagcucGUCGCG-CGcACGGCGcCGAu -3'
miRNA:   3'- -CGUCGAGa--------UAGCGCaGC-UGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 6418 0.69 0.72534
Target:  5'- aCAGCUUgcugAUCGUGUCGGCGuccuuCGUGu -3'
miRNA:   3'- cGUCGAGa---UAGCGCAGCUGUu----GCGCu -5'
24045 3' -52.5 NC_005262.1 + 17228 0.7 0.714647
Target:  5'- aGCGGCUC-GUCGCGaucaacUCGGCcgaggaGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGC------AGCUG------UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 37912 0.7 0.693026
Target:  5'- cGCgGGCUaUAUCGCGUgGACGauugGCGCGc -3'
miRNA:   3'- -CG-UCGAgAUAGCGCAgCUGU----UGCGCu -5'
24045 3' -52.5 NC_005262.1 + 30638 0.7 0.682122
Target:  5'- --cGCUCggcaagGUgccCGCGUCgGACAACGCGGa -3'
miRNA:   3'- cguCGAGa-----UA---GCGCAG-CUGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.