miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 17228 0.7 0.714647
Target:  5'- aGCGGCUC-GUCGCGaucaacUCGGCcgaggaGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGC------AGCUG------UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 51357 0.68 0.777173
Target:  5'- uGCAGCUCggcaccgCGcCGUCcGCGACGCc- -3'
miRNA:   3'- -CGUCGAGaua----GC-GCAGcUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 40354 0.69 0.767063
Target:  5'- gGCGcGCUgaUGUCGauCGUCGGCGACGuCGAc -3'
miRNA:   3'- -CGU-CGAg-AUAGC--GCAGCUGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 18746 0.69 0.767063
Target:  5'- cGCGGCUCgg-CGCGUCGuagaugucguAgAACGCu- -3'
miRNA:   3'- -CGUCGAGauaGCGCAGC----------UgUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 6975 0.69 0.767063
Target:  5'- uGCAGCUCgaAUCGgugaaGUaCGGCGACGCu- -3'
miRNA:   3'- -CGUCGAGa-UAGCg----CA-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 55415 0.69 0.756813
Target:  5'- aGCAGCUCga--GCGcCGGCugGAgGCGAa -3'
miRNA:   3'- -CGUCGAGauagCGCaGCUG--UUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 61151 0.69 0.746435
Target:  5'- cGCAGCag-AUCGCGgCGGCGG-GCGAg -3'
miRNA:   3'- -CGUCGagaUAGCGCaGCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58877 0.69 0.744344
Target:  5'- cGCAGCcCg--CGCGUUGGCugcugccgcgcuGCGCGAu -3'
miRNA:   3'- -CGUCGaGauaGCGCAGCUGu-----------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 20715 0.69 0.73594
Target:  5'- cGCAGCccaUCacgGUCGCGUCGcucgGCAGCuCGAc -3'
miRNA:   3'- -CGUCG---AGa--UAGCGCAGC----UGUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 43977 0.69 0.73594
Target:  5'- -aGGCUCUG-CGCGU-GAUcGCGCGGg -3'
miRNA:   3'- cgUCGAGAUaGCGCAgCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 17045 0.69 0.72534
Target:  5'- aGCAGCUCcgcgagcucGUCGCG-CGcACGGCGcCGAu -3'
miRNA:   3'- -CGUCGAGa--------UAGCGCaGC-UGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 6418 0.69 0.72534
Target:  5'- aCAGCUUgcugAUCGUGUCGGCGuccuuCGUGu -3'
miRNA:   3'- cGUCGAGa---UAGCGCAGCUGUu----GCGCu -5'
24045 3' -52.5 NC_005262.1 + 54413 0.66 0.891124
Target:  5'- aGguGC-CgagCGCGUCGAUGACGUc- -3'
miRNA:   3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 29498 0.66 0.891124
Target:  5'- uGCuGCUCcucgaGCGUCG-CGAuCGCGAg -3'
miRNA:   3'- -CGuCGAGauag-CGCAGCuGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 17634 0.66 0.891124
Target:  5'- cGCGGCUgccgcCUcgCGCG-CGACcGCGUGc -3'
miRNA:   3'- -CGUCGA-----GAuaGCGCaGCUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 31165 0.66 0.891124
Target:  5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3'
miRNA:   3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 33701 0.66 0.898234
Target:  5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3'
miRNA:   3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 35216 0.66 0.898234
Target:  5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3'
miRNA:   3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 33328 0.66 0.905076
Target:  5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3'
miRNA:   3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 37529 0.77 0.314546
Target:  5'- uGCGGCccaUC-AUCGCGUUGuCGACGCGAu -3'
miRNA:   3'- -CGUCG---AGaUAGCGCAGCuGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.