miRNA display CGI


Results 61 - 80 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 51463 0.68 0.796931
Target:  5'- cGCGGC-CUuggccggcGUCGCG--GACGGCGCGGu -3'
miRNA:   3'- -CGUCGaGA--------UAGCGCagCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 50469 0.68 0.777173
Target:  5'- cGCGGUUCgcGUCGCcacgGUCGACgAAUGCGc -3'
miRNA:   3'- -CGUCGAGa-UAGCG----CAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 51958 0.68 0.777173
Target:  5'- uCGGCUCggucgugcUCGCGUCGuucGCGGCGCc- -3'
miRNA:   3'- cGUCGAGau------AGCGCAGC---UGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 44451 0.69 0.771125
Target:  5'- aGguGCUCgucgaacuucagCGCGUCGACGuucuuUGCGGg -3'
miRNA:   3'- -CguCGAGaua---------GCGCAGCUGUu----GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 10630 0.69 0.72534
Target:  5'- cGCGGC-CgGUCGCGUCGGCAuagcCGUu- -3'
miRNA:   3'- -CGUCGaGaUAGCGCAGCUGUu---GCGcu -5'
24045 3' -52.5 NC_005262.1 + 40682 0.67 0.843112
Target:  5'- uGCGGCaUCUG-CGCcacCGuCAGCGCGAc -3'
miRNA:   3'- -CGUCG-AGAUaGCGca-GCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 47235 0.67 0.860092
Target:  5'- cGCGcCUCgccgGUCGCGUCGACcuugagcuuGACGuUGAa -3'
miRNA:   3'- -CGUcGAGa---UAGCGCAGCUG---------UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 24373 0.67 0.868226
Target:  5'- gGCGGCgagcGUCGCGcCGAUuGCuGCGAa -3'
miRNA:   3'- -CGUCGaga-UAGCGCaGCUGuUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 33328 0.66 0.905076
Target:  5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3'
miRNA:   3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 35216 0.66 0.898234
Target:  5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3'
miRNA:   3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 33701 0.66 0.898234
Target:  5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3'
miRNA:   3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 31165 0.66 0.891124
Target:  5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3'
miRNA:   3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17634 0.66 0.891124
Target:  5'- cGCGGCUgccgcCUcgCGCG-CGACcGCGUGc -3'
miRNA:   3'- -CGUCGA-----GAuaGCGCaGCUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 29498 0.66 0.891124
Target:  5'- uGCuGCUCcucgaGCGUCG-CGAuCGCGAg -3'
miRNA:   3'- -CGuCGAGauag-CGCAGCuGUU-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 54413 0.66 0.891124
Target:  5'- aGguGC-CgagCGCGUCGAUGACGUc- -3'
miRNA:   3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 34397 0.66 0.878431
Target:  5'- gGCGGCgaccgugccguUCGCGaacucgcuguccuUCGACAGCGCGc -3'
miRNA:   3'- -CGUCGagau-------AGCGC-------------AGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 5389 0.66 0.876114
Target:  5'- cCAGCUCcgacCGCcUCGACcGCGUGAu -3'
miRNA:   3'- cGUCGAGaua-GCGcAGCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 46690 0.66 0.876114
Target:  5'- gGCGGgaUCUGUgGCGUCugcggcgagGACGGCGCu- -3'
miRNA:   3'- -CGUCg-AGAUAgCGCAG---------CUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 50538 0.66 0.876114
Target:  5'- uGCGGCcguccucCUcgCGCGgcaCGACGACGUGc -3'
miRNA:   3'- -CGUCGa------GAuaGCGCa--GCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 22188 0.67 0.868226
Target:  5'- uGCAGCag-GUCGaCGUUGACcGCGUGc -3'
miRNA:   3'- -CGUCGagaUAGC-GCAGCUGuUGCGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.