miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 17342 0.66 0.905076
Target:  5'- cGCAGCUCgaacaggCGCGUCuccuCGGC-CGAg -3'
miRNA:   3'- -CGUCGAGaua----GCGCAGcu--GUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 27002 0.67 0.833389
Target:  5'- cCGGCUCgggaucGUCGCGcggaugaUCGACAACG-GAc -3'
miRNA:   3'- cGUCGAGa-----UAGCGC-------AGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 11582 0.68 0.825242
Target:  5'- uGCAGC-Cga--GC-UCGGCGACGCGGc -3'
miRNA:   3'- -CGUCGaGauagCGcAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 37529 0.77 0.314546
Target:  5'- uGCGGCccaUC-AUCGCGUUGuCGACGCGAu -3'
miRNA:   3'- -CGUCG---AGaUAGCGCAGCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 31165 0.66 0.891124
Target:  5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3'
miRNA:   3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 17634 0.66 0.891124
Target:  5'- cGCGGCUgccgcCUcgCGCG-CGACcGCGUGc -3'
miRNA:   3'- -CGUCGA-----GAuaGCGCaGCUGuUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 54413 0.66 0.891124
Target:  5'- aGguGC-CgagCGCGUCGAUGACGUc- -3'
miRNA:   3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 34397 0.66 0.878431
Target:  5'- gGCGGCgaccgugccguUCGCGaacucgcuguccuUCGACAGCGCGc -3'
miRNA:   3'- -CGUCGagau-------AGCGC-------------AGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 50538 0.66 0.876114
Target:  5'- uGCGGCcguccucCUcgCGCGgcaCGACGACGUGc -3'
miRNA:   3'- -CGUCGa------GAuaGCGCa--GCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 41663 0.67 0.843112
Target:  5'- aGUAGUUCgaguaCGUGUUGugGGCGUGGc -3'
miRNA:   3'- -CGUCGAGaua--GCGCAGCugUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 24373 0.67 0.868226
Target:  5'- gGCGGCgagcGUCGCGcCGAUuGCuGCGAa -3'
miRNA:   3'- -CGUCGaga-UAGCGCaGCUGuUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 46690 0.66 0.876114
Target:  5'- gGCGGgaUCUGUgGCGUCugcggcgagGACGGCGCu- -3'
miRNA:   3'- -CGUCg-AGAUAgCGCAG---------CUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 33328 0.66 0.905076
Target:  5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3'
miRNA:   3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 47235 0.67 0.860092
Target:  5'- cGCGcCUCgccgGUCGCGUCGACcuugagcuuGACGuUGAa -3'
miRNA:   3'- -CGUcGAGa---UAGCGCAGCUG---------UUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 35216 0.66 0.898234
Target:  5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3'
miRNA:   3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5'
24045 3' -52.5 NC_005262.1 + 5389 0.66 0.876114
Target:  5'- cCAGCUCcgacCGCcUCGACcGCGUGAu -3'
miRNA:   3'- cGUCGAGaua-GCGcAGCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 40682 0.67 0.843112
Target:  5'- uGCGGCaUCUG-CGCcacCGuCAGCGCGAc -3'
miRNA:   3'- -CGUCG-AGAUaGCGca-GCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 21514 0.68 0.825242
Target:  5'- cCAGCUCg--CGgaCGUCGGCcguCGCGAg -3'
miRNA:   3'- cGUCGAGauaGC--GCAGCUGuu-GCGCU- -5'
24045 3' -52.5 NC_005262.1 + 33701 0.66 0.898234
Target:  5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3'
miRNA:   3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5'
24045 3' -52.5 NC_005262.1 + 29498 0.66 0.891124
Target:  5'- uGCuGCUCcucgaGCGUCG-CGAuCGCGAg -3'
miRNA:   3'- -CGuCGAGauag-CGCAGCuGUU-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.