Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 24820 | 0.68 | 0.815995 |
Target: 5'- cGCAcGC-CgAUCGCGcgCGcCAGCGCGAu -3' miRNA: 3'- -CGU-CGaGaUAGCGCa-GCuGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11582 | 0.68 | 0.825242 |
Target: 5'- uGCAGC-Cga--GC-UCGGCGACGCGGc -3' miRNA: 3'- -CGUCGaGauagCGcAGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 46690 | 0.66 | 0.876114 |
Target: 5'- gGCGGgaUCUGUgGCGUCugcggcgagGACGGCGCu- -3' miRNA: 3'- -CGUCg-AGAUAgCGCAG---------CUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 33701 | 0.66 | 0.898234 |
Target: 5'- gGCGGCUUUuccugCGaCGUCGggGCGACuGCGGu -3' miRNA: 3'- -CGUCGAGAua---GC-GCAGC--UGUUG-CGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 30398 | 0.7 | 0.67117 |
Target: 5'- cGCAuCUCgcUCGCGgucugggccuugUCGACAGCGCGc -3' miRNA: 3'- -CGUcGAGauAGCGC------------AGCUGUUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 44451 | 0.69 | 0.771125 |
Target: 5'- aGguGCUCgucgaacuucagCGCGUCGACGuucuuUGCGGg -3' miRNA: 3'- -CguCGAGaua---------GCGCAGCUGUu----GCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 27002 | 0.67 | 0.833389 |
Target: 5'- cCGGCUCgggaucGUCGCGcggaugaUCGACAACG-GAc -3' miRNA: 3'- cGUCGAGa-----UAGCGC-------AGCUGUUGCgCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 35216 | 0.66 | 0.898234 |
Target: 5'- uGCAGCgacagGUaCGUcuugGUCGGCAGCGgGAa -3' miRNA: 3'- -CGUCGaga--UA-GCG----CAGCUGUUGCgCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 51958 | 0.68 | 0.777173 |
Target: 5'- uCGGCUCggucgugcUCGCGUCGuucGCGGCGCc- -3' miRNA: 3'- cGUCGAGau------AGCGCAGC---UGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 33328 | 0.66 | 0.905076 |
Target: 5'- aGC-GCUCgacgugCGCGUCGAUguuGACGuCGGc -3' miRNA: 3'- -CGuCGAGaua---GCGCAGCUG---UUGC-GCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 21514 | 0.68 | 0.825242 |
Target: 5'- cCAGCUCg--CGgaCGUCGGCcguCGCGAg -3' miRNA: 3'- cGUCGAGauaGC--GCAGCUGuu-GCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 30244 | 0.68 | 0.805601 |
Target: 5'- uCAGCU---UCGCGUCGGCAuccgccgGCGCu- -3' miRNA: 3'- cGUCGAgauAGCGCAGCUGU-------UGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 47235 | 0.67 | 0.860092 |
Target: 5'- cGCGcCUCgccgGUCGCGUCGACcuugagcuuGACGuUGAa -3' miRNA: 3'- -CGUcGAGa---UAGCGCAGCUG---------UUGC-GCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 50538 | 0.66 | 0.876114 |
Target: 5'- uGCGGCcguccucCUcgCGCGgcaCGACGACGUGc -3' miRNA: 3'- -CGUCGa------GAuaGCGCa--GCUGUUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 54413 | 0.66 | 0.891124 |
Target: 5'- aGguGC-CgagCGCGUCGAUGACGUc- -3' miRNA: 3'- -CguCGaGauaGCGCAGCUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 31165 | 0.66 | 0.891124 |
Target: 5'- cGCGGCUCgcccuUCaG-GUCGGCgAGCGCGu -3' miRNA: 3'- -CGUCGAGau---AG-CgCAGCUG-UUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11014 | 0.72 | 0.583089 |
Target: 5'- cGCGGCUCgaUGUCGa--CGACGAgGCGAa -3' miRNA: 3'- -CGUCGAG--AUAGCgcaGCUGUUgCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 58775 | 0.71 | 0.649165 |
Target: 5'- cCAGCUUguugCGCGcUCG-CAACGCGGg -3' miRNA: 3'- cGUCGAGaua-GCGC-AGCuGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11517 | 0.7 | 0.703872 |
Target: 5'- cGCGGCg-UGUCGCGcaccuUCGGCGgcccgGCGCGGc -3' miRNA: 3'- -CGUCGagAUAGCGC-----AGCUGU-----UGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 10630 | 0.69 | 0.72534 |
Target: 5'- cGCGGC-CgGUCGCGUCGGCAuagcCGUu- -3' miRNA: 3'- -CGUCGaGaUAGCGCAGCUGUu---GCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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