miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 51958 0.68 0.777173
Target:  5'- uCGGCUCggucgugcUCGCGUCGuucGCGGCGCc- -3'
miRNA:   3'- cGUCGAGau------AGCGCAGC---UGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 59096 0.73 0.518454
Target:  5'- cGCGGCUUgcagacgGUCgaaGCG-CGACGGCGCGGg -3'
miRNA:   3'- -CGUCGAGa------UAG---CGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 53155 0.76 0.346772
Target:  5'- aGCAGCUUcgcgAUCGCGcCGGuCAGCGCGu -3'
miRNA:   3'- -CGUCGAGa---UAGCGCaGCU-GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 11014 0.72 0.583089
Target:  5'- cGCGGCUCgaUGUCGa--CGACGAgGCGAa -3'
miRNA:   3'- -CGUCGAG--AUAGCgcaGCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 58775 0.71 0.649165
Target:  5'- cCAGCUUguugCGCGcUCG-CAACGCGGg -3'
miRNA:   3'- cGUCGAGaua-GCGC-AGCuGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 48155 0.74 0.446962
Target:  5'- gGCGGCUC-GUCGCGgcaggugCGAcCGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGCa------GCU-GUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 23687 0.66 0.905076
Target:  5'- aGCGGCgcgugugggUCUAccggCGCacgGUCGACcACGCGGc -3'
miRNA:   3'- -CGUCG---------AGAUa---GCG---CAGCUGuUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 24345 0.71 0.638133
Target:  5'- uGCGGCUCU---GCGUCGGC-GCGCc- -3'
miRNA:   3'- -CGUCGAGAuagCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 43695 0.66 0.898234
Target:  5'- -gGGC-CgaauUCGCG-CGGCGACGCGc -3'
miRNA:   3'- cgUCGaGau--AGCGCaGCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 24819 0.66 0.898234
Target:  5'- cGCgAGCUCgcgAUCGCGgcCGGCGcCGUGc -3'
miRNA:   3'- -CG-UCGAGa--UAGCGCa-GCUGUuGCGCu -5'
24045 3' -52.5 NC_005262.1 + 9288 0.66 0.898234
Target:  5'- aGCAccCUCUGagUGCGaCGACAGCGUGGc -3'
miRNA:   3'- -CGUc-GAGAUa-GCGCaGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 42167 0.68 0.796931
Target:  5'- cGCGGCcgaucgUCUGUaCGUGaugggCGACGGCGCGc -3'
miRNA:   3'- -CGUCG------AGAUA-GCGCa----GCUGUUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 4561 0.68 0.806555
Target:  5'- cGCGGCgcaUCUcgCGCcagCGGCGGCGCu- -3'
miRNA:   3'- -CGUCG---AGAuaGCGca-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 15144 0.68 0.815995
Target:  5'- cGCGGC-Cg---GCGUCGAguCGGCGCGGa -3'
miRNA:   3'- -CGUCGaGauagCGCAGCU--GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 54105 0.68 0.787133
Target:  5'- cGCuGCUgCgccUCGaCGUCGACGGCGCc- -3'
miRNA:   3'- -CGuCGA-Gau-AGC-GCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 51357 0.68 0.777173
Target:  5'- uGCAGCUCggcaccgCGcCGUCcGCGACGCc- -3'
miRNA:   3'- -CGUCGAGaua----GC-GCAGcUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 61724 0.68 0.815995
Target:  5'- gGCGcGCUCUGcuuacuucgcCGCGUCGugGAUGCu- -3'
miRNA:   3'- -CGU-CGAGAUa---------GCGCAGCugUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 6418 0.69 0.72534
Target:  5'- aCAGCUUgcugAUCGUGUCGGCGuccuuCGUGu -3'
miRNA:   3'- cGUCGAGa---UAGCGCAGCUGUu----GCGCu -5'
24045 3' -52.5 NC_005262.1 + 17228 0.7 0.714647
Target:  5'- aGCGGCUC-GUCGCGaucaacUCGGCcgaggaGACGCGc -3'
miRNA:   3'- -CGUCGAGaUAGCGC------AGCUG------UUGCGCu -5'
24045 3' -52.5 NC_005262.1 + 37912 0.7 0.693026
Target:  5'- cGCgGGCUaUAUCGCGUgGACGauugGCGCGc -3'
miRNA:   3'- -CG-UCGAgAUAGCGCAgCUGU----UGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.