miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 3' -52.5 NC_005262.1 + 49875 0.71 0.661281
Target:  5'- aGCAGCUCagccggccggaaacgGUCGauuguCGUCGGCGACGaCGGg -3'
miRNA:   3'- -CGUCGAGa--------------UAGC-----GCAGCUGUUGC-GCU- -5'
24045 3' -52.5 NC_005262.1 + 24345 0.71 0.638133
Target:  5'- uGCGGCUCU---GCGUCGGC-GCGCc- -3'
miRNA:   3'- -CGUCGAGAuagCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 19300 0.72 0.605046
Target:  5'- cGCAGC-Cga-CGUGcUCGGCGAUGCGAg -3'
miRNA:   3'- -CGUCGaGauaGCGC-AGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 60836 0.72 0.583089
Target:  5'- cCGGC-CUA-CGCGaUCGGCGugGCGAu -3'
miRNA:   3'- cGUCGaGAUaGCGC-AGCUGUugCGCU- -5'
24045 3' -52.5 NC_005262.1 + 51357 0.68 0.777173
Target:  5'- uGCAGCUCggcaccgCGcCGUCcGCGACGCc- -3'
miRNA:   3'- -CGUCGAGaua----GC-GCAGcUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 54105 0.68 0.787133
Target:  5'- cGCuGCUgCgccUCGaCGUCGACGGCGCc- -3'
miRNA:   3'- -CGuCGA-Gau-AGC-GCAGCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 56530 0.68 0.796931
Target:  5'- cGUGGUUCccggcAUC-CGUCGAgCAGCGCGAg -3'
miRNA:   3'- -CGUCGAGa----UAGcGCAGCU-GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 7173 0.66 0.898234
Target:  5'- cGCAuGCcgCUAcCGCGUaauuGCGGCGCGAu -3'
miRNA:   3'- -CGU-CGa-GAUaGCGCAgc--UGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 63294 0.66 0.891124
Target:  5'- cCGGCUgCUGgcUCgGCGUCGACGuggaacacGCGCGc -3'
miRNA:   3'- cGUCGA-GAU--AG-CGCAGCUGU--------UGCGCu -5'
24045 3' -52.5 NC_005262.1 + 43486 0.66 0.891124
Target:  5'- gGCGGCgaccgUCUA-CGCGgaCGGCAAgGCGGu -3'
miRNA:   3'- -CGUCG-----AGAUaGCGCa-GCUGUUgCGCU- -5'
24045 3' -52.5 NC_005262.1 + 17603 0.66 0.891124
Target:  5'- cGCAGCgcgcggagCUGgaGCGcCaGCAGCGCGAg -3'
miRNA:   3'- -CGUCGa-------GAUagCGCaGcUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 45729 0.66 0.883749
Target:  5'- aGCAGUUCggcAUCcCGUCcGACAucguucccgcgaACGCGAc -3'
miRNA:   3'- -CGUCGAGa--UAGcGCAG-CUGU------------UGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 40413 0.66 0.876114
Target:  5'- uCAGC-Cg--CGCGUCGGCGACcUGAa -3'
miRNA:   3'- cGUCGaGauaGCGCAGCUGUUGcGCU- -5'
24045 3' -52.5 NC_005262.1 + 35206 0.66 0.876114
Target:  5'- cCAGC-CUAcgucCGCaaggaugcggagGUCGGCGGCGCGAu -3'
miRNA:   3'- cGUCGaGAUa---GCG------------CAGCUGUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 12324 0.66 0.876114
Target:  5'- uGCGGCUCgugccgcagCGCG-CGGCGGCaGCa- -3'
miRNA:   3'- -CGUCGAGaua------GCGCaGCUGUUG-CGcu -5'
24045 3' -52.5 NC_005262.1 + 7527 0.67 0.868226
Target:  5'- gGCAgGUUCggcggCGCGUCGGC-GCGCu- -3'
miRNA:   3'- -CGU-CGAGaua--GCGCAGCUGuUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 61724 0.68 0.815995
Target:  5'- gGCGcGCUCUGcuuacuucgcCGCGUCGugGAUGCu- -3'
miRNA:   3'- -CGU-CGAGAUa---------GCGCAGCugUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 15144 0.68 0.815995
Target:  5'- cGCGGC-Cg---GCGUCGAguCGGCGCGGa -3'
miRNA:   3'- -CGUCGaGauagCGCAGCU--GUUGCGCU- -5'
24045 3' -52.5 NC_005262.1 + 4561 0.68 0.806555
Target:  5'- cGCGGCgcaUCUcgCGCcagCGGCGGCGCu- -3'
miRNA:   3'- -CGUCG---AGAuaGCGca-GCUGUUGCGcu -5'
24045 3' -52.5 NC_005262.1 + 42167 0.68 0.796931
Target:  5'- cGCGGCcgaucgUCUGUaCGUGaugggCGACGGCGCGc -3'
miRNA:   3'- -CGUCG------AGAUA-GCGCa----GCUGUUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.