Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24045 | 3' | -52.5 | NC_005262.1 | + | 17603 | 0.66 | 0.891124 |
Target: 5'- cGCAGCgcgcggagCUGgaGCGcCaGCAGCGCGAg -3' miRNA: 3'- -CGUCGa-------GAUagCGCaGcUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 43486 | 0.66 | 0.891124 |
Target: 5'- gGCGGCgaccgUCUA-CGCGgaCGGCAAgGCGGu -3' miRNA: 3'- -CGUCG-----AGAUaGCGCa-GCUGUUgCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 63294 | 0.66 | 0.891124 |
Target: 5'- cCGGCUgCUGgcUCgGCGUCGACGuggaacacGCGCGc -3' miRNA: 3'- cGUCGA-GAU--AG-CGCAGCUGU--------UGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 7173 | 0.66 | 0.898234 |
Target: 5'- cGCAuGCcgCUAcCGCGUaauuGCGGCGCGAu -3' miRNA: 3'- -CGU-CGa-GAUaGCGCAgc--UGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 9288 | 0.66 | 0.898234 |
Target: 5'- aGCAccCUCUGagUGCGaCGACAGCGUGGc -3' miRNA: 3'- -CGUc-GAGAUa-GCGCaGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 58785 | 0.67 | 0.860092 |
Target: 5'- cGC-GUUCcggCGCuggGUCGACGACGUGAu -3' miRNA: 3'- -CGuCGAGauaGCG---CAGCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 11146 | 0.67 | 0.855095 |
Target: 5'- cGUGGCUCcgGUCGCacgggcggcccugCGACAACGCcGAc -3' miRNA: 3'- -CGUCGAGa-UAGCGca-----------GCUGUUGCG-CU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 56530 | 0.68 | 0.796931 |
Target: 5'- cGUGGUUCccggcAUC-CGUCGAgCAGCGCGAg -3' miRNA: 3'- -CGUCGAGa----UAGcGCAGCU-GUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 42167 | 0.68 | 0.796931 |
Target: 5'- cGCGGCcgaucgUCUGUaCGUGaugggCGACGGCGCGc -3' miRNA: 3'- -CGUCG------AGAUA-GCGCa----GCUGUUGCGCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 4561 | 0.68 | 0.806555 |
Target: 5'- cGCGGCgcaUCUcgCGCcagCGGCGGCGCu- -3' miRNA: 3'- -CGUCG---AGAuaGCGca-GCUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 15144 | 0.68 | 0.815995 |
Target: 5'- cGCGGC-Cg---GCGUCGAguCGGCGCGGa -3' miRNA: 3'- -CGUCGaGauagCGCAGCU--GUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 61724 | 0.68 | 0.815995 |
Target: 5'- gGCGcGCUCUGcuuacuucgcCGCGUCGugGAUGCu- -3' miRNA: 3'- -CGU-CGAGAUa---------GCGCAGCugUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 71 | 0.68 | 0.825242 |
Target: 5'- cGCGGCUCg--CGaagaaGUCGGCcGCGCc- -3' miRNA: 3'- -CGUCGAGauaGCg----CAGCUGuUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 40549 | 0.67 | 0.834284 |
Target: 5'- gGCGGCUCUuaCGCGcCGgGCAACaccgGCGGu -3' miRNA: 3'- -CGUCGAGAuaGCGCaGC-UGUUG----CGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 38907 | 0.67 | 0.843112 |
Target: 5'- cGCAGUauuUCUugcGUCGCGcagaUCGAUGGCGCu- -3' miRNA: 3'- -CGUCG---AGA---UAGCGC----AGCUGUUGCGcu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 50370 | 0.67 | 0.843112 |
Target: 5'- aGCGGCgcauUCGuCGaccgUGGCGACGCGAa -3' miRNA: 3'- -CGUCGagauAGC-GCa---GCUGUUGCGCU- -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 31288 | 0.67 | 0.851718 |
Target: 5'- cGCGGCcaagAUCGCGgCGACAAUGgGu -3' miRNA: 3'- -CGUCGaga-UAGCGCaGCUGUUGCgCu -5' |
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24045 | 3' | -52.5 | NC_005262.1 | + | 24819 | 0.66 | 0.898234 |
Target: 5'- cGCgAGCUCgcgAUCGCGgcCGGCGcCGUGc -3' miRNA: 3'- -CG-UCGAGa--UAGCGCa-GCUGUuGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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