miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24045 5' -46.2 NC_005262.1 + 23137 0.69 0.972578
Target:  5'- ---aUCG-CGUCGAUGCAgUauccgGCUGCg -3'
miRNA:   3'- uaaaAGCaGUAGUUGCGUgAa----CGACG- -5'
24045 5' -46.2 NC_005262.1 + 36261 0.69 0.969285
Target:  5'- ---aUCGUCAcCGAUGCAgaUGCguggGCg -3'
miRNA:   3'- uaaaAGCAGUaGUUGCGUgaACGa---CG- -5'
24045 5' -46.2 NC_005262.1 + 42504 0.69 0.96572
Target:  5'- ---aUCGcCGaacgCGACGCAUcUGCUGCu -3'
miRNA:   3'- uaaaAGCaGUa---GUUGCGUGaACGACG- -5'
24045 5' -46.2 NC_005262.1 + 62203 0.69 0.961473
Target:  5'- ---gUCGUCGUucauccgCGACGCGgUUGCcGCg -3'
miRNA:   3'- uaaaAGCAGUA-------GUUGCGUgAACGaCG- -5'
24045 5' -46.2 NC_005262.1 + 26592 0.7 0.953305
Target:  5'- ---cUCgGUCAUcCAGCGCuGCU-GCUGCa -3'
miRNA:   3'- uaaaAG-CAGUA-GUUGCG-UGAaCGACG- -5'
24045 5' -46.2 NC_005262.1 + 51258 0.7 0.953305
Target:  5'- ----gCGUCGUCGGCuGC-CU-GCUGCg -3'
miRNA:   3'- uaaaaGCAGUAGUUG-CGuGAaCGACG- -5'
24045 5' -46.2 NC_005262.1 + 38668 0.7 0.943525
Target:  5'- ----gCGUCAUCAuuggccgcugACGCAacgauuCUUGCUGUg -3'
miRNA:   3'- uaaaaGCAGUAGU----------UGCGU------GAACGACG- -5'
24045 5' -46.2 NC_005262.1 + 48150 0.71 0.930141
Target:  5'- ---cUCGUCGcggcaggugcgacCGACGCGCUUGCggGCg -3'
miRNA:   3'- uaaaAGCAGUa------------GUUGCGUGAACGa-CG- -5'
24045 5' -46.2 NC_005262.1 + 37515 0.71 0.92651
Target:  5'- ----gCGUUGUCGACGCGauagaGCUGCa -3'
miRNA:   3'- uaaaaGCAGUAGUUGCGUgaa--CGACG- -5'
24045 5' -46.2 NC_005262.1 + 34575 0.71 0.920206
Target:  5'- ----aCGUCGUguGCGCGCcgUGCgGCg -3'
miRNA:   3'- uaaaaGCAGUAguUGCGUGa-ACGaCG- -5'
24045 5' -46.2 NC_005262.1 + 16087 0.73 0.867401
Target:  5'- ---cUCGUCGUCggUGC-CgcGCUGCa -3'
miRNA:   3'- uaaaAGCAGUAGuuGCGuGaaCGACG- -5'
24045 5' -46.2 NC_005262.1 + 706 0.73 0.858679
Target:  5'- --gUUCGUCGUCGAUgauguaGCGCUUGUgccaGCa -3'
miRNA:   3'- uaaAAGCAGUAGUUG------CGUGAACGa---CG- -5'
24045 5' -46.2 NC_005262.1 + 10027 0.74 0.790631
Target:  5'- --cUUCGcCGUCAGCGCGCUgcGCUuuGCg -3'
miRNA:   3'- uaaAAGCaGUAGUUGCGUGAa-CGA--CG- -5'
24045 5' -46.2 NC_005262.1 + 25610 0.74 0.790631
Target:  5'- ----aCGUCG-CGACGCGgaUGCUGCu -3'
miRNA:   3'- uaaaaGCAGUaGUUGCGUgaACGACG- -5'
24045 5' -46.2 NC_005262.1 + 54327 0.75 0.769296
Target:  5'- ----aCGUCAUCGACGCGCUcgGCa-- -3'
miRNA:   3'- uaaaaGCAGUAGUUGCGUGAa-CGacg -5'
24045 5' -46.2 NC_005262.1 + 35087 0.77 0.631585
Target:  5'- ----aCGUCAUCAACuCGCU-GCUGCg -3'
miRNA:   3'- uaaaaGCAGUAGUUGcGUGAaCGACG- -5'
24045 5' -46.2 NC_005262.1 + 37465 1.12 0.005551
Target:  5'- cAUUUUCGUCAUCAACGCACUUGCUGCg -3'
miRNA:   3'- -UAAAAGCAGUAGUUGCGUGAACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.