Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24045 | 5' | -46.2 | NC_005262.1 | + | 37465 | 1.12 | 0.005551 |
Target: 5'- cAUUUUCGUCAUCAACGCACUUGCUGCg -3' miRNA: 3'- -UAAAAGCAGUAGUUGCGUGAACGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 39129 | 0.66 | 0.997018 |
Target: 5'- -aUUUUGUCGcUCAACGaCGCUggcgacguaGCUGUc -3' miRNA: 3'- uaAAAGCAGU-AGUUGC-GUGAa--------CGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 12329 | 0.66 | 0.996418 |
Target: 5'- ---cUCGUgCcgCAGCGCGCggcgGCaGCa -3' miRNA: 3'- uaaaAGCA-GuaGUUGCGUGaa--CGaCG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 58808 | 0.66 | 0.994919 |
Target: 5'- ----aCGUgAUCGGCGCcgugaaggcaugGCU-GCUGCg -3' miRNA: 3'- uaaaaGCAgUAGUUGCG------------UGAaCGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 55260 | 0.66 | 0.994919 |
Target: 5'- -----gGUCAUCAucACGCACUcgGCguucgGCc -3' miRNA: 3'- uaaaagCAGUAGU--UGCGUGAa-CGa----CG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 35433 | 0.67 | 0.992948 |
Target: 5'- --gUUCGUguUCGACGUcgGCUcGCUGa -3' miRNA: 3'- uaaAAGCAguAGUUGCG--UGAaCGACg -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 42852 | 0.67 | 0.991755 |
Target: 5'- ----cCGUgCAUCAACGCGCgcggGCUcGUc -3' miRNA: 3'- uaaaaGCA-GUAGUUGCGUGaa--CGA-CG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 43442 | 0.67 | 0.987203 |
Target: 5'- ---aUCGaCggCGACGCGCUUG-UGCg -3' miRNA: 3'- uaaaAGCaGuaGUUGCGUGAACgACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 36261 | 0.69 | 0.969285 |
Target: 5'- ---aUCGUCAcCGAUGCAgaUGCguggGCg -3' miRNA: 3'- uaaaAGCAGUaGUUGCGUgaACGa---CG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 35087 | 0.77 | 0.631585 |
Target: 5'- ----aCGUCAUCAACuCGCU-GCUGCg -3' miRNA: 3'- uaaaaGCAGUAGUUGcGUGAaCGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 54327 | 0.75 | 0.769296 |
Target: 5'- ----aCGUCAUCGACGCGCUcgGCa-- -3' miRNA: 3'- uaaaaGCAGUAGUUGCGUGAa-CGacg -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 706 | 0.73 | 0.858679 |
Target: 5'- --gUUCGUCGUCGAUgauguaGCGCUUGUgccaGCa -3' miRNA: 3'- uaaAAGCAGUAGUUG------CGUGAACGa---CG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 34575 | 0.71 | 0.920206 |
Target: 5'- ----aCGUCGUguGCGCGCcgUGCgGCg -3' miRNA: 3'- uaaaaGCAGUAguUGCGUGa-ACGaCG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 38668 | 0.7 | 0.943525 |
Target: 5'- ----gCGUCAUCAuuggccgcugACGCAacgauuCUUGCUGUg -3' miRNA: 3'- uaaaaGCAGUAGU----------UGCGU------GAACGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 42504 | 0.69 | 0.96572 |
Target: 5'- ---aUCGcCGaacgCGACGCAUcUGCUGCu -3' miRNA: 3'- uaaaAGCaGUa---GUUGCGUGaACGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 25610 | 0.74 | 0.790631 |
Target: 5'- ----aCGUCG-CGACGCGgaUGCUGCu -3' miRNA: 3'- uaaaaGCAGUaGUUGCGUgaACGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 60013 | 0.66 | 0.997018 |
Target: 5'- ---cUCGUCGUUGaucuggauGCGCACggGCUcGCc -3' miRNA: 3'- uaaaAGCAGUAGU--------UGCGUGaaCGA-CG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 272 | 0.66 | 0.996418 |
Target: 5'- ---aUCGUCAcCGGCaCGCU-GCUGUa -3' miRNA: 3'- uaaaAGCAGUaGUUGcGUGAaCGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 10682 | 0.66 | 0.996352 |
Target: 5'- ----aUGUCAUCGAagccgcuCGCGCcgcGCUGCu -3' miRNA: 3'- uaaaaGCAGUAGUU-------GCGUGaa-CGACG- -5' |
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24045 | 5' | -46.2 | NC_005262.1 | + | 30493 | 0.66 | 0.994919 |
Target: 5'- ----cCGUC--CAGCGCACgcggcucgUGCUGUa -3' miRNA: 3'- uaaaaGCAGuaGUUGCGUGa-------ACGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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