miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24046 3' -55.2 NC_005262.1 + 46435 0.66 0.770619
Target:  5'- aGGG--GCC-CGCCGCGCcGCcCGCg- -3'
miRNA:   3'- -CCUaaUGGaGCGGUGCGuCGaGCGac -5'
24046 3' -55.2 NC_005262.1 + 13238 0.66 0.760519
Target:  5'- aGGAguug--UGCCGCGCAGCgcgCGCg- -3'
miRNA:   3'- -CCUaauggaGCGGUGCGUCGa--GCGac -5'
24046 3' -55.2 NC_005262.1 + 51915 0.66 0.750289
Target:  5'- ----cACUUCGCgACGuCGGCcgCGCUGa -3'
miRNA:   3'- ccuaaUGGAGCGgUGC-GUCGa-GCGAC- -5'
24046 3' -55.2 NC_005262.1 + 28805 0.66 0.750289
Target:  5'- ----gACCUCGCgccCGCGCaucucgAGCUCGCg- -3'
miRNA:   3'- ccuaaUGGAGCG---GUGCG------UCGAGCGac -5'
24046 3' -55.2 NC_005262.1 + 49220 0.66 0.750289
Target:  5'- aGGGcgGCCUCGgcggCGCGCAGUcCGCg- -3'
miRNA:   3'- -CCUaaUGGAGCg---GUGCGUCGaGCGac -5'
24046 3' -55.2 NC_005262.1 + 10672 0.66 0.750289
Target:  5'- ----aGCCgcucgCGCCGCGCuGCUcCGCg- -3'
miRNA:   3'- ccuaaUGGa----GCGGUGCGuCGA-GCGac -5'
24046 3' -55.2 NC_005262.1 + 12666 0.66 0.750289
Target:  5'- ----cGCCUCGCCGgcggcagcaGCAGCUCGaCg- -3'
miRNA:   3'- ccuaaUGGAGCGGUg--------CGUCGAGC-Gac -5'
24046 3' -55.2 NC_005262.1 + 51348 0.66 0.739941
Target:  5'- ----aAUC-CGCCAUGCAGCUCGg-- -3'
miRNA:   3'- ccuaaUGGaGCGGUGCGUCGAGCgac -5'
24046 3' -55.2 NC_005262.1 + 63417 0.66 0.739941
Target:  5'- aGGGcguugACCUCgGCgACGCGGCgCGCg- -3'
miRNA:   3'- -CCUaa---UGGAG-CGgUGCGUCGaGCGac -5'
24046 3' -55.2 NC_005262.1 + 59696 0.66 0.729486
Target:  5'- cGGcgUGCC--GCCACGCGGg-CGCUa -3'
miRNA:   3'- -CCuaAUGGagCGGUGCGUCgaGCGAc -5'
24046 3' -55.2 NC_005262.1 + 14411 0.66 0.729486
Target:  5'- ----aACUUCGCCGCcCAGCUCGg-- -3'
miRNA:   3'- ccuaaUGGAGCGGUGcGUCGAGCgac -5'
24046 3' -55.2 NC_005262.1 + 1917 0.67 0.718935
Target:  5'- cGGAgggUGCgg-GUUGCGUGGCUCGCUGg -3'
miRNA:   3'- -CCUa--AUGgagCGGUGCGUCGAGCGAC- -5'
24046 3' -55.2 NC_005262.1 + 36204 0.67 0.718935
Target:  5'- ----cGCCUCGCCguaucGCGCAGCgUCGaaGa -3'
miRNA:   3'- ccuaaUGGAGCGG-----UGCGUCG-AGCgaC- -5'
24046 3' -55.2 NC_005262.1 + 51416 0.67 0.708299
Target:  5'- cGGAUUcgAUCUUGCCGCGC-GCggaugCGCc- -3'
miRNA:   3'- -CCUAA--UGGAGCGGUGCGuCGa----GCGac -5'
24046 3' -55.2 NC_005262.1 + 61735 0.67 0.69759
Target:  5'- --cUUACUUCGCCGCGUcGUggaUGCUGg -3'
miRNA:   3'- ccuAAUGGAGCGGUGCGuCGa--GCGAC- -5'
24046 3' -55.2 NC_005262.1 + 30499 0.67 0.686817
Target:  5'- cGAgcGCCguccaGCgCACGCGGCUCGUg- -3'
miRNA:   3'- cCUaaUGGag---CG-GUGCGUCGAGCGac -5'
24046 3' -55.2 NC_005262.1 + 276 0.67 0.686817
Target:  5'- ----cACCUCGUCuCGCGGCUCcgGCUc -3'
miRNA:   3'- ccuaaUGGAGCGGuGCGUCGAG--CGAc -5'
24046 3' -55.2 NC_005262.1 + 20693 0.67 0.675994
Target:  5'- cGGAUUggcuacgcaacaGCCcugcggcgCGCCGCGCGcuGCUCGCc- -3'
miRNA:   3'- -CCUAA------------UGGa-------GCGGUGCGU--CGAGCGac -5'
24046 3' -55.2 NC_005262.1 + 3146 0.67 0.675994
Target:  5'- gGGAUUucucCCUUGCCuuucuggcgcauGCGCAGgUCGCc- -3'
miRNA:   3'- -CCUAAu---GGAGCGG------------UGCGUCgAGCGac -5'
24046 3' -55.2 NC_005262.1 + 48679 0.68 0.654234
Target:  5'- cGAUUGCag-GCCGagGCGGCUCGCUu -3'
miRNA:   3'- cCUAAUGgagCGGUg-CGUCGAGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.