miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24047 5' -61.3 NC_005262.1 + 13556 0.66 0.455465
Target:  5'- cGCGCgacgCGCGCGGGcUUCgCgCCCUUg- -3'
miRNA:   3'- aCGCG----GCGCGCCCuAAG-GaGGGAGag -5'
24047 5' -61.3 NC_005262.1 + 9146 0.66 0.43675
Target:  5'- aUGCgGUCGUG-GaGGAUUCCUCCUcccguUCUCc -3'
miRNA:   3'- -ACG-CGGCGCgC-CCUAAGGAGGG-----AGAG- -5'
24047 5' -61.3 NC_005262.1 + 1154 0.66 0.418485
Target:  5'- aUGCuGCCGCGCGGGcuugCCaUCCUgcgCg -3'
miRNA:   3'- -ACG-CGGCGCGCCCuaa-GG-AGGGagaG- -5'
24047 5' -61.3 NC_005262.1 + 51717 0.67 0.366588
Target:  5'- gGCGCCGUuucCGGGGcaauUUCCUCUgCUUUCu -3'
miRNA:   3'- aCGCGGCGc--GCCCU----AAGGAGG-GAGAG- -5'
24047 5' -61.3 NC_005262.1 + 15666 0.67 0.366588
Target:  5'- cGCGCgCGCGCGccuccagcUCCUCCUgcUCUCg -3'
miRNA:   3'- aCGCG-GCGCGCccua----AGGAGGG--AGAG- -5'
24047 5' -61.3 NC_005262.1 + 50175 0.68 0.329911
Target:  5'- cGCGCgGCGCGGG-UUcggucggcgcagcggCCUUCgUCUCc -3'
miRNA:   3'- aCGCGgCGCGCCCuAA---------------GGAGGgAGAG- -5'
24047 5' -61.3 NC_005262.1 + 60583 0.69 0.263591
Target:  5'- cUGCGCCGCGCGgcccGGcgUCUcgCCCUgaUCg -3'
miRNA:   3'- -ACGCGGCGCGC----CCuaAGGa-GGGAg-AG- -5'
24047 5' -61.3 NC_005262.1 + 17407 0.7 0.250957
Target:  5'- cGCGCuCGCGCuccuugcGGucugcUUCCUCCUUCUCc -3'
miRNA:   3'- aCGCG-GCGCGc------CCu----AAGGAGGGAGAG- -5'
24047 5' -61.3 NC_005262.1 + 62029 0.71 0.221555
Target:  5'- -uCGCCGCGCGcGA-UCCUCCUcCUCg -3'
miRNA:   3'- acGCGGCGCGCcCUaAGGAGGGaGAG- -5'
24047 5' -61.3 NC_005262.1 + 27648 0.72 0.180643
Target:  5'- cGCGCUGCGCGGcg-UCCUCgCCggggcugagCUCg -3'
miRNA:   3'- aCGCGGCGCGCCcuaAGGAG-GGa--------GAG- -5'
24047 5' -61.3 NC_005262.1 + 44489 0.72 0.180643
Target:  5'- gUGCGgCGCGCGGGugguaUCCCUCg- -3'
miRNA:   3'- -ACGCgGCGCGCCCuaaggAGGGAGag -5'
24047 5' -61.3 NC_005262.1 + 39935 1.08 0.000329
Target:  5'- gUGCGCCGCGCGGGAUUCCUCCCUCUCu -3'
miRNA:   3'- -ACGCGGCGCGCCCUAAGGAGGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.