miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24048 5' -58.5 NC_005262.1 + 40315 1.05 0.001004
Target:  5'- uUCAACCCCGGCGACCGCUUCGAGCAUc -3'
miRNA:   3'- -AGUUGGGGCCGCUGGCGAAGCUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 41197 0.9 0.014202
Target:  5'- --cGCgCCCGGCGACCGCUUCGAGCAc -3'
miRNA:   3'- aguUG-GGGCCGCUGGCGAAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 9812 0.76 0.148868
Target:  5'- cCAACUCgGGCGACCGCUUCGuGa-- -3'
miRNA:   3'- aGUUGGGgCCGCUGGCGAAGCuCgua -5'
24048 5' -58.5 NC_005262.1 + 27555 0.75 0.174719
Target:  5'- cUCAGCCCCGGCGAggaCGCcgCGcAGCGc -3'
miRNA:   3'- -AGUUGGGGCCGCUg--GCGaaGC-UCGUa -5'
24048 5' -58.5 NC_005262.1 + 55769 0.74 0.189092
Target:  5'- cCAACCaguaCGGCGACaucguugcggGCUUCGAGCAg -3'
miRNA:   3'- aGUUGGg---GCCGCUGg---------CGAAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 33378 0.71 0.277262
Target:  5'- uUCGGCgCCCGGCGugCGCg-CGAuGCGg -3'
miRNA:   3'- -AGUUG-GGGCCGCugGCGaaGCU-CGUa -5'
24048 5' -58.5 NC_005262.1 + 24310 0.7 0.320035
Target:  5'- cUCAACCaaucggcgugCCGGCGcagcgucgcggcuGCCGCcUCGGGCGUg -3'
miRNA:   3'- -AGUUGG----------GGCCGC-------------UGGCGaAGCUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 49180 0.69 0.377811
Target:  5'- cCAugCCCGGCGccaucguaacgGCCuGC-UCGGGCAg -3'
miRNA:   3'- aGUugGGGCCGC-----------UGG-CGaAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 57029 0.69 0.386493
Target:  5'- --cGCCCgcgcggauCGGCGugCGCUucUCGAGCGc -3'
miRNA:   3'- aguUGGG--------GCCGCugGCGA--AGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 49592 0.69 0.395304
Target:  5'- -aGGCCCuCGGCGAUCGCgcugCGcGCAc -3'
miRNA:   3'- agUUGGG-GCCGCUGGCGaa--GCuCGUa -5'
24048 5' -58.5 NC_005262.1 + 11499 0.69 0.404245
Target:  5'- uUCGGCggCCCGGCGcggcGCgGCUUCG-GCGUg -3'
miRNA:   3'- -AGUUG--GGGCCGC----UGgCGAAGCuCGUA- -5'
24048 5' -58.5 NC_005262.1 + 34251 0.69 0.413312
Target:  5'- cUCGACCuucgugCCGGCGACgGCcggCGGGUAg -3'
miRNA:   3'- -AGUUGG------GGCCGCUGgCGaa-GCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 61378 0.68 0.422503
Target:  5'- cCGACCCCgcgaGGCuGGCCGCgccgaUCGAGUc- -3'
miRNA:   3'- aGUUGGGG----CCG-CUGGCGa----AGCUCGua -5'
24048 5' -58.5 NC_005262.1 + 24769 0.68 0.422503
Target:  5'- uUCAGCaCCgCGGCGAgCCGgg-CGAGCAc -3'
miRNA:   3'- -AGUUG-GG-GCCGCU-GGCgaaGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 971 0.68 0.422503
Target:  5'- gUCAGCCCCugccgaguGGCGACCuGCg--GGGCGg -3'
miRNA:   3'- -AGUUGGGG--------CCGCUGG-CGaagCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 8642 0.68 0.438407
Target:  5'- uUCAGCCCCGauGCGAUCGUagaccuuuccggucUUCGGGUu- -3'
miRNA:   3'- -AGUUGGGGC--CGCUGGCG--------------AAGCUCGua -5'
24048 5' -58.5 NC_005262.1 + 7643 0.68 0.460457
Target:  5'- gUCGACgCCggCGGCGACgGCUaucuccgCGAGCGg -3'
miRNA:   3'- -AGUUG-GG--GCCGCUGgCGAa------GCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 6453 0.68 0.460457
Target:  5'- uUCGGCUCCGGCGagacGCCGgCaUCGAcGCGg -3'
miRNA:   3'- -AGUUGGGGCCGC----UGGC-GaAGCU-CGUa -5'
24048 5' -58.5 NC_005262.1 + 16485 0.68 0.460457
Target:  5'- -gAAUCCCGGCGGCCGgccgGGGCGg -3'
miRNA:   3'- agUUGGGGCCGCUGGCgaagCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 25642 0.67 0.480098
Target:  5'- cUCcAUCCCGGCcguGCCGaagUCGGGCAUu -3'
miRNA:   3'- -AGuUGGGGCCGc--UGGCga-AGCUCGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.