Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 971 | 0.68 | 0.422503 |
Target: 5'- gUCAGCCCCugccgaguGGCGACCuGCg--GGGCGg -3' miRNA: 3'- -AGUUGGGG--------CCGCUGG-CGaagCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 1214 | 0.67 | 0.510299 |
Target: 5'- -aAGCCCgCaGCGGCCGCa--GAGCAa -3' miRNA: 3'- agUUGGG-GcCGCUGGCGaagCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 1424 | 0.67 | 0.520543 |
Target: 5'- aCGACC---GCGGCCGCUucgUCGAGCGc -3' miRNA: 3'- aGUUGGggcCGCUGGCGA---AGCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 6453 | 0.68 | 0.460457 |
Target: 5'- uUCGGCUCCGGCGagacGCCGgCaUCGAcGCGg -3' miRNA: 3'- -AGUUGGGGCCGC----UGGC-GaAGCU-CGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 7643 | 0.68 | 0.460457 |
Target: 5'- gUCGACgCCggCGGCGACgGCUaucuccgCGAGCGg -3' miRNA: 3'- -AGUUG-GG--GCCGCUGgCGAa------GCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 8642 | 0.68 | 0.438407 |
Target: 5'- uUCAGCCCCGauGCGAUCGUagaccuuuccggucUUCGGGUu- -3' miRNA: 3'- -AGUUGGGGC--CGCUGGCG--------------AAGCUCGua -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 9812 | 0.76 | 0.148868 |
Target: 5'- cCAACUCgGGCGACCGCUUCGuGa-- -3' miRNA: 3'- aGUUGGGgCCGCUGGCGAAGCuCgua -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 11499 | 0.69 | 0.404245 |
Target: 5'- uUCGGCggCCCGGCGcggcGCgGCUUCG-GCGUg -3' miRNA: 3'- -AGUUG--GGGCCGC----UGgCGAAGCuCGUA- -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 11578 | 0.66 | 0.541265 |
Target: 5'- cUAugCCggCGGCGGCCaGCgcUCGAGCGa -3' miRNA: 3'- aGUugGG--GCCGCUGG-CGa-AGCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 11727 | 0.67 | 0.510299 |
Target: 5'- gCGACgCCGGCG-CCGC--CGAGCc- -3' miRNA: 3'- aGUUGgGGCCGCuGGCGaaGCUCGua -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 12111 | 0.66 | 0.562254 |
Target: 5'- aUCAGCgCCGcCGugCGCg-CGAGCAg -3' miRNA: 3'- -AGUUGgGGCcGCugGCGaaGCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 12901 | 0.66 | 0.55068 |
Target: 5'- aUCAGCCCCGGCcugcuggacgacGACaaccugcgcggcgCGCUgaaGGGCGUg -3' miRNA: 3'- -AGUUGGGGCCG------------CUG-------------GCGAag-CUCGUA- -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 14745 | 0.67 | 0.520543 |
Target: 5'- aCGACCaucGCGGCUGCUaugCGAGCAa -3' miRNA: 3'- aGUUGGggcCGCUGGCGAa--GCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 16485 | 0.68 | 0.460457 |
Target: 5'- -gAAUCCCGGCGGCCGgccgGGGCGg -3' miRNA: 3'- agUUGGGGCCGCUGGCgaagCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 17563 | 0.66 | 0.551729 |
Target: 5'- gCAGCCgCGGCGGCgCGCgaagcCGAGgAg -3' miRNA: 3'- aGUUGGgGCCGCUG-GCGaa---GCUCgUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 18182 | 0.66 | 0.541265 |
Target: 5'- gUCGACgCCGGC---CGCUUCGAgGCAUu -3' miRNA: 3'- -AGUUGgGGCCGcugGCGAAGCU-CGUA- -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 23196 | 0.66 | 0.551729 |
Target: 5'- aCAGCCCCGGCcaaaGGCCGaagUUauccacaagGAGCAUc -3' miRNA: 3'- aGUUGGGGCCG----CUGGCga-AG---------CUCGUA- -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 24310 | 0.7 | 0.320035 |
Target: 5'- cUCAACCaaucggcgugCCGGCGcagcgucgcggcuGCCGCcUCGGGCGUg -3' miRNA: 3'- -AGUUGG----------GGCCGC-------------UGGCGaAGCUCGUA- -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 24769 | 0.68 | 0.422503 |
Target: 5'- uUCAGCaCCgCGGCGAgCCGgg-CGAGCAc -3' miRNA: 3'- -AGUUG-GG-GCCGCU-GGCgaaGCUCGUa -5' |
|||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 25642 | 0.67 | 0.480098 |
Target: 5'- cUCcAUCCCGGCcguGCCGaagUCGGGCAUu -3' miRNA: 3'- -AGuUGGGGCCGc--UGGCga-AGCUCGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home