miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24048 5' -58.5 NC_005262.1 + 63412 0.67 0.520543
Target:  5'- gUUGACCUCGGCGA-CGCggCGcGCGUg -3'
miRNA:   3'- -AGUUGGGGCCGCUgGCGaaGCuCGUA- -5'
24048 5' -58.5 NC_005262.1 + 61378 0.68 0.422503
Target:  5'- cCGACCCCgcgaGGCuGGCCGCgccgaUCGAGUc- -3'
miRNA:   3'- aGUUGGGG----CCG-CUGGCGa----AGCUCGua -5'
24048 5' -58.5 NC_005262.1 + 59053 0.66 0.572832
Target:  5'- -aGGCCgCCGGCGGCCgGCUgguUCGAcuGCu- -3'
miRNA:   3'- agUUGG-GGCCGCUGG-CGA---AGCU--CGua -5'
24048 5' -58.5 NC_005262.1 + 57029 0.69 0.386493
Target:  5'- --cGCCCgcgcggauCGGCGugCGCUucUCGAGCGc -3'
miRNA:   3'- aguUGGG--------GCCGCugGCGA--AGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 55926 0.67 0.50014
Target:  5'- gUCGACCguCCGGCGAUCGa---GGGCGg -3'
miRNA:   3'- -AGUUGG--GGCCGCUGGCgaagCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 55769 0.74 0.189092
Target:  5'- cCAACCaguaCGGCGACaucguugcggGCUUCGAGCAg -3'
miRNA:   3'- aGUUGGg---GCCGCUGg---------CGAAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 51417 0.67 0.510299
Target:  5'- gCGugCUCGGCGGCgCGCgcgaGGGCGa -3'
miRNA:   3'- aGUugGGGCCGCUG-GCGaag-CUCGUa -5'
24048 5' -58.5 NC_005262.1 + 50596 0.67 0.520543
Target:  5'- cUCAACCCgGuagcGCGAgCGCUUCG-GCu- -3'
miRNA:   3'- -AGUUGGGgC----CGCUgGCGAAGCuCGua -5'
24048 5' -58.5 NC_005262.1 + 49592 0.69 0.395304
Target:  5'- -aGGCCCuCGGCGAUCGCgcugCGcGCAc -3'
miRNA:   3'- agUUGGG-GCCGCUGGCGaa--GCuCGUa -5'
24048 5' -58.5 NC_005262.1 + 49223 0.66 0.562254
Target:  5'- gCGGCCUCGGCGGCgCGCaguccgCGcGCGa -3'
miRNA:   3'- aGUUGGGGCCGCUG-GCGaa----GCuCGUa -5'
24048 5' -58.5 NC_005262.1 + 49180 0.69 0.377811
Target:  5'- cCAugCCCGGCGccaucguaacgGCCuGC-UCGGGCAg -3'
miRNA:   3'- aGUugGGGCCGC-----------UGG-CGaAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 48672 0.67 0.50014
Target:  5'- -aGGCCgaGGCGGCuCGCUucguucgggUCGAGCAc -3'
miRNA:   3'- agUUGGggCCGCUG-GCGA---------AGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 45623 0.66 0.572832
Target:  5'- cUCGACaCCGGCGACaGCUUcccggagacgcgCGAGCu- -3'
miRNA:   3'- -AGUUGgGGCCGCUGgCGAA------------GCUCGua -5'
24048 5' -58.5 NC_005262.1 + 45298 0.66 0.572832
Target:  5'- cCGAgCCCGGCGgacauGCCGCcugcgaGGGCAg -3'
miRNA:   3'- aGUUgGGGCCGC-----UGGCGaag---CUCGUa -5'
24048 5' -58.5 NC_005262.1 + 45049 0.66 0.572832
Target:  5'- aUCAACCCggCGaGCGGCCGaUUCcaGGGCAUc -3'
miRNA:   3'- -AGUUGGG--GC-CGCUGGCgAAG--CUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 41197 0.9 0.014202
Target:  5'- --cGCgCCCGGCGACCGCUUCGAGCAc -3'
miRNA:   3'- aguUG-GGGCCGCUGGCGAAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 40315 1.05 0.001004
Target:  5'- uUCAACCCCGGCGACCGCUUCGAGCAUc -3'
miRNA:   3'- -AGUUGGGGCCGCUGGCGAAGCUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 35754 0.66 0.582393
Target:  5'- aCGGCCaaGGCGGcauuuucguucacCCGCgcgCGAGCGUu -3'
miRNA:   3'- aGUUGGggCCGCU-------------GGCGaa-GCUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 34760 0.66 0.551729
Target:  5'- gUCGugCC-GGCG-CCGCU-CGAGCu- -3'
miRNA:   3'- -AGUugGGgCCGCuGGCGAaGCUCGua -5'
24048 5' -58.5 NC_005262.1 + 34251 0.69 0.413312
Target:  5'- cUCGACCuucgugCCGGCGACgGCcggCGGGUAg -3'
miRNA:   3'- -AGUUGG------GGCCGCUGgCGaa-GCUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.