miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24048 5' -58.5 NC_005262.1 + 34760 0.66 0.551729
Target:  5'- gUCGugCC-GGCG-CCGCU-CGAGCu- -3'
miRNA:   3'- -AGUugGGgCCGCuGGCGAaGCUCGua -5'
24048 5' -58.5 NC_005262.1 + 51417 0.67 0.510299
Target:  5'- gCGugCUCGGCGGCgCGCgcgaGGGCGa -3'
miRNA:   3'- aGUugGGGCCGCUG-GCGaag-CUCGUa -5'
24048 5' -58.5 NC_005262.1 + 1424 0.67 0.520543
Target:  5'- aCGACC---GCGGCCGCUucgUCGAGCGc -3'
miRNA:   3'- aGUUGGggcCGCUGGCGA---AGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 14745 0.67 0.520543
Target:  5'- aCGACCaucGCGGCUGCUaugCGAGCAa -3'
miRNA:   3'- aGUUGGggcCGCUGGCGAa--GCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 50596 0.67 0.520543
Target:  5'- cUCAACCCgGuagcGCGAgCGCUUCG-GCu- -3'
miRNA:   3'- -AGUUGGGgC----CGCUgGCGAAGCuCGua -5'
24048 5' -58.5 NC_005262.1 + 11578 0.66 0.541265
Target:  5'- cUAugCCggCGGCGGCCaGCgcUCGAGCGa -3'
miRNA:   3'- aGUugGG--GCCGCUGG-CGa-AGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 12901 0.66 0.55068
Target:  5'- aUCAGCCCCGGCcugcuggacgacGACaaccugcgcggcgCGCUgaaGGGCGUg -3'
miRNA:   3'- -AGUUGGGGCCG------------CUG-------------GCGAag-CUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 23196 0.66 0.551729
Target:  5'- aCAGCCCCGGCcaaaGGCCGaagUUauccacaagGAGCAUc -3'
miRNA:   3'- aGUUGGGGCCG----CUGGCga-AG---------CUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 17563 0.66 0.551729
Target:  5'- gCAGCCgCGGCGGCgCGCgaagcCGAGgAg -3'
miRNA:   3'- aGUUGGgGCCGCUG-GCGaa---GCUCgUa -5'
24048 5' -58.5 NC_005262.1 + 55926 0.67 0.50014
Target:  5'- gUCGACCguCCGGCGAUCGa---GGGCGg -3'
miRNA:   3'- -AGUUGG--GGCCGCUGGCgaagCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 29494 0.67 0.480098
Target:  5'- aUCAGCCgcaUGGCGAuCCGCga-GGGCGUc -3'
miRNA:   3'- -AGUUGGg--GCCGCU-GGCGaagCUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 25642 0.67 0.480098
Target:  5'- cUCcAUCCCGGCcguGCCGaagUCGGGCAUu -3'
miRNA:   3'- -AGuUGGGGCCGc--UGGCga-AGCUCGUA- -5'
24048 5' -58.5 NC_005262.1 + 41197 0.9 0.014202
Target:  5'- --cGCgCCCGGCGACCGCUUCGAGCAc -3'
miRNA:   3'- aguUG-GGGCCGCUGGCGAAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 9812 0.76 0.148868
Target:  5'- cCAACUCgGGCGACCGCUUCGuGa-- -3'
miRNA:   3'- aGUUGGGgCCGCUGGCGAAGCuCgua -5'
24048 5' -58.5 NC_005262.1 + 27555 0.75 0.174719
Target:  5'- cUCAGCCCCGGCGAggaCGCcgCGcAGCGc -3'
miRNA:   3'- -AGUUGGGGCCGCUg--GCGaaGC-UCGUa -5'
24048 5' -58.5 NC_005262.1 + 55769 0.74 0.189092
Target:  5'- cCAACCaguaCGGCGACaucguugcggGCUUCGAGCAg -3'
miRNA:   3'- aGUUGGg---GCCGCUGg---------CGAAGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 971 0.68 0.422503
Target:  5'- gUCAGCCCCugccgaguGGCGACCuGCg--GGGCGg -3'
miRNA:   3'- -AGUUGGGG--------CCGCUGG-CGaagCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 24769 0.68 0.422503
Target:  5'- uUCAGCaCCgCGGCGAgCCGgg-CGAGCAc -3'
miRNA:   3'- -AGUUG-GG-GCCGCU-GGCgaaGCUCGUa -5'
24048 5' -58.5 NC_005262.1 + 6453 0.68 0.460457
Target:  5'- uUCGGCUCCGGCGagacGCCGgCaUCGAcGCGg -3'
miRNA:   3'- -AGUUGGGGCCGC----UGGC-GaAGCU-CGUa -5'
24048 5' -58.5 NC_005262.1 + 7643 0.68 0.460457
Target:  5'- gUCGACgCCggCGGCGACgGCUaucuccgCGAGCGg -3'
miRNA:   3'- -AGUUG-GG--GCCGCUGgCGAa------GCUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.