Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24048 | 5' | -58.5 | NC_005262.1 | + | 45298 | 0.66 | 0.572832 |
Target: 5'- cCGAgCCCGGCGgacauGCCGCcugcgaGGGCAg -3' miRNA: 3'- aGUUgGGGCCGC-----UGGCGaag---CUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 11499 | 0.69 | 0.404245 |
Target: 5'- uUCGGCggCCCGGCGcggcGCgGCUUCG-GCGUg -3' miRNA: 3'- -AGUUG--GGGCCGC----UGgCGAAGCuCGUA- -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 8642 | 0.68 | 0.438407 |
Target: 5'- uUCAGCCCCGauGCGAUCGUagaccuuuccggucUUCGGGUu- -3' miRNA: 3'- -AGUUGGGGC--CGCUGGCG--------------AAGCUCGua -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 16485 | 0.68 | 0.460457 |
Target: 5'- -gAAUCCCGGCGGCCGgccgGGGCGg -3' miRNA: 3'- agUUGGGGCCGCUGGCgaagCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 11727 | 0.67 | 0.510299 |
Target: 5'- gCGACgCCGGCG-CCGC--CGAGCc- -3' miRNA: 3'- aGUUGgGGCCGCuGGCGaaGCUCGua -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 1214 | 0.67 | 0.510299 |
Target: 5'- -aAGCCCgCaGCGGCCGCa--GAGCAa -3' miRNA: 3'- agUUGGG-GcCGCUGGCGaagCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 33378 | 0.71 | 0.277262 |
Target: 5'- uUCGGCgCCCGGCGugCGCg-CGAuGCGg -3' miRNA: 3'- -AGUUG-GGGCCGCugGCGaaGCU-CGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 57029 | 0.69 | 0.386493 |
Target: 5'- --cGCCCgcgcggauCGGCGugCGCUucUCGAGCGc -3' miRNA: 3'- aguUGGG--------GCCGCugGCGA--AGCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 34251 | 0.69 | 0.413312 |
Target: 5'- cUCGACCuucgugCCGGCGACgGCcggCGGGUAg -3' miRNA: 3'- -AGUUGG------GGCCGCUGgCGaa-GCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 48672 | 0.67 | 0.50014 |
Target: 5'- -aGGCCgaGGCGGCuCGCUucguucgggUCGAGCAc -3' miRNA: 3'- agUUGGggCCGCUG-GCGA---------AGCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 59053 | 0.66 | 0.572832 |
Target: 5'- -aGGCCgCCGGCGGCCgGCUgguUCGAcuGCu- -3' miRNA: 3'- agUUGG-GGCCGCUGG-CGA---AGCU--CGua -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 49180 | 0.69 | 0.377811 |
Target: 5'- cCAugCCCGGCGccaucguaacgGCCuGC-UCGGGCAg -3' miRNA: 3'- aGUugGGGCCGC-----------UGG-CGaAGCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 18182 | 0.66 | 0.541265 |
Target: 5'- gUCGACgCCGGC---CGCUUCGAgGCAUu -3' miRNA: 3'- -AGUUGgGGCCGcugGCGAAGCU-CGUA- -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 61378 | 0.68 | 0.422503 |
Target: 5'- cCGACCCCgcgaGGCuGGCCGCgccgaUCGAGUc- -3' miRNA: 3'- aGUUGGGG----CCG-CUGGCGa----AGCUCGua -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 24310 | 0.7 | 0.320035 |
Target: 5'- cUCAACCaaucggcgugCCGGCGcagcgucgcggcuGCCGCcUCGGGCGUg -3' miRNA: 3'- -AGUUGG----------GGCCGC-------------UGGCGaAGCUCGUA- -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 63412 | 0.67 | 0.520543 |
Target: 5'- gUUGACCUCGGCGA-CGCggCGcGCGUg -3' miRNA: 3'- -AGUUGGGGCCGCUgGCGaaGCuCGUA- -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 49592 | 0.69 | 0.395304 |
Target: 5'- -aGGCCCuCGGCGAUCGCgcugCGcGCAc -3' miRNA: 3'- agUUGGG-GCCGCUGGCGaa--GCuCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 14745 | 0.67 | 0.520543 |
Target: 5'- aCGACCaucGCGGCUGCUaugCGAGCAa -3' miRNA: 3'- aGUUGGggcCGCUGGCGAa--GCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 1424 | 0.67 | 0.520543 |
Target: 5'- aCGACC---GCGGCCGCUucgUCGAGCGc -3' miRNA: 3'- aGUUGGggcCGCUGGCGA---AGCUCGUa -5' |
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24048 | 5' | -58.5 | NC_005262.1 | + | 51417 | 0.67 | 0.510299 |
Target: 5'- gCGugCUCGGCGGCgCGCgcgaGGGCGa -3' miRNA: 3'- aGUugGGGCCGCUG-GCGaag-CUCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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