miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 3' -52.7 NC_005262.1 + 53884 0.66 0.886845
Target:  5'- cCGCUGUCGACCUGCau--CAGGUUg- -3'
miRNA:   3'- -GUGGUAGCUGGACGcgcuGUUCAAgu -5'
24049 3' -52.7 NC_005262.1 + 48050 0.66 0.886099
Target:  5'- gCGCCcgcaagcgcgucgGUCGcACCUGcCGCGACGAGc--- -3'
miRNA:   3'- -GUGG-------------UAGC-UGGAC-GCGCUGUUCaagu -5'
24049 3' -52.7 NC_005262.1 + 48161 0.66 0.879262
Target:  5'- gCGCCGggCGGCUcGuCGCGGCAGGUgCGa -3'
miRNA:   3'- -GUGGUa-GCUGGaC-GCGCUGUUCAaGU- -5'
24049 3' -52.7 NC_005262.1 + 25834 0.66 0.879262
Target:  5'- gGCCGUgagcggcuugcCGGCCUGCGCGAUcgccUCGg -3'
miRNA:   3'- gUGGUA-----------GCUGGACGCGCUGuucaAGU- -5'
24049 3' -52.7 NC_005262.1 + 5192 0.66 0.879262
Target:  5'- gCGCgGgcgCGGCCgGCGCGAcCGAGggCGu -3'
miRNA:   3'- -GUGgUa--GCUGGaCGCGCU-GUUCaaGU- -5'
24049 3' -52.7 NC_005262.1 + 20505 0.66 0.879262
Target:  5'- gCACCAUCGGCgCggcgcuCGCGACGAccUCAc -3'
miRNA:   3'- -GUGGUAGCUG-Gac----GCGCUGUUcaAGU- -5'
24049 3' -52.7 NC_005262.1 + 56541 0.66 0.87142
Target:  5'- gCAuCCGUCGAgCaGCGCGAgGGGcgCAu -3'
miRNA:   3'- -GU-GGUAGCUgGaCGCGCUgUUCaaGU- -5'
24049 3' -52.7 NC_005262.1 + 15963 0.66 0.87142
Target:  5'- gGCUuccgGUCGACCUGCuggcgauCGACGAGaUCGg -3'
miRNA:   3'- gUGG----UAGCUGGACGc------GCUGUUCaAGU- -5'
24049 3' -52.7 NC_005262.1 + 46991 0.66 0.87142
Target:  5'- uCGCCGgaUCGcCCUGCGCGA--GGUacguuUCAg -3'
miRNA:   3'- -GUGGU--AGCuGGACGCGCUguUCA-----AGU- -5'
24049 3' -52.7 NC_005262.1 + 16481 0.66 0.863324
Target:  5'- -cCCggCGGCCgGcCGgGGCGGGUUCAa -3'
miRNA:   3'- guGGuaGCUGGaC-GCgCUGUUCAAGU- -5'
24049 3' -52.7 NC_005262.1 + 4885 0.66 0.863324
Target:  5'- gCGCCGacUCGACCUgcuucgGCGUGACGucgggcAGUUUg -3'
miRNA:   3'- -GUGGU--AGCUGGA------CGCGCUGU------UCAAGu -5'
24049 3' -52.7 NC_005262.1 + 6132 0.66 0.863324
Target:  5'- uCGCC-UCGAUgUGCGCGGCcGGg--- -3'
miRNA:   3'- -GUGGuAGCUGgACGCGCUGuUCaagu -5'
24049 3' -52.7 NC_005262.1 + 43086 0.66 0.863324
Target:  5'- uCAUCAUCGACCUGacCG-GGCAAGaggCAu -3'
miRNA:   3'- -GUGGUAGCUGGAC--GCgCUGUUCaa-GU- -5'
24049 3' -52.7 NC_005262.1 + 43922 0.66 0.8625
Target:  5'- gCGCCAaccgCGGCCgacuacaacacgcUGCGCGACGAcGUgagCAu -3'
miRNA:   3'- -GUGGUa---GCUGG-------------ACGCGCUGUU-CAa--GU- -5'
24049 3' -52.7 NC_005262.1 + 25690 0.66 0.854982
Target:  5'- gGCCGagGGCC-GCGagGGCGAGUUCu -3'
miRNA:   3'- gUGGUagCUGGaCGCg-CUGUUCAAGu -5'
24049 3' -52.7 NC_005262.1 + 11504 0.66 0.846402
Target:  5'- gCACCuucggCGGCCcgGCGCGGCGcGGcUUCGg -3'
miRNA:   3'- -GUGGua---GCUGGa-CGCGCUGU-UC-AAGU- -5'
24049 3' -52.7 NC_005262.1 + 56944 0.66 0.846402
Target:  5'- gCGCaCGcCGAUCcGCGCGgGCGAGUUCGc -3'
miRNA:   3'- -GUG-GUaGCUGGaCGCGC-UGUUCAAGU- -5'
24049 3' -52.7 NC_005262.1 + 10777 0.67 0.837593
Target:  5'- gGCC-UCGAUCUGCGCaugcagGAUgcGUUCGg -3'
miRNA:   3'- gUGGuAGCUGGACGCG------CUGuuCAAGU- -5'
24049 3' -52.7 NC_005262.1 + 51164 0.67 0.837593
Target:  5'- uGCCuUCcuCCUGCGCGGCGAGc--- -3'
miRNA:   3'- gUGGuAGcuGGACGCGCUGUUCaagu -5'
24049 3' -52.7 NC_005262.1 + 12172 0.67 0.837593
Target:  5'- gGCCG-CGcugUCUGCGCGGCAGGagCAa -3'
miRNA:   3'- gUGGUaGCu--GGACGCGCUGUUCaaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.