miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 24349 0.65 0.617606
Target:  5'- gCUCUgcgucgGCGCGCCugauaccuGCAACccugucgacgccaaACCGGCGg -3'
miRNA:   3'- -GAGAa-----UGCGCGGcc------CGUUG--------------UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46812 0.66 0.610174
Target:  5'- aUCcgguCGUGCCGGauuGCGCCGGCu -3'
miRNA:   3'- gAGaau-GCGCGGCCcguUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 18012 0.66 0.610174
Target:  5'- gCUCgccgUugGCGUCGGcGCcg-AUCGGCGg -3'
miRNA:   3'- -GAGa---AugCGCGGCC-CGuugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 50961 0.66 0.610174
Target:  5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5'
24049 5' -58.5 NC_005262.1 + 17492 0.66 0.610174
Target:  5'- ----cGCGCGCCGcGcGCGACGCgucgauCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC-C-CGUUGUG------GCCGc -5'
24049 5' -58.5 NC_005262.1 + 41606 0.66 0.610174
Target:  5'- ---cUugGCGCUcaGGGCAGCGgaaCGGUGa -3'
miRNA:   3'- gagaAugCGCGG--CCCGUUGUg--GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 10452 0.66 0.610174
Target:  5'- gCUCg-GCaaGCCGGGCGgaagccgcgacgACAgCGGCGa -3'
miRNA:   3'- -GAGaaUGcgCGGCCCGU------------UGUgGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 299 0.66 0.610174
Target:  5'- -cCUUGCgacagGCGUCGGGC-ACGCCaGCc -3'
miRNA:   3'- gaGAAUG-----CGCGGCCCGuUGUGGcCGc -5'
24049 5' -58.5 NC_005262.1 + 7753 0.66 0.609113
Target:  5'- aUCUUugGCGUGCCGcucGCGGagauagccgucgcCGCCGGCGu -3'
miRNA:   3'- gAGAA--UGCGCGGCc--CGUU-------------GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 13551 0.66 0.599572
Target:  5'- ----gACGCGCgCGGGCuucGCGCCcuuGCGa -3'
miRNA:   3'- gagaaUGCGCG-GCCCGu--UGUGGc--CGC- -5'
24049 5' -58.5 NC_005262.1 + 5857 0.66 0.599572
Target:  5'- aUC-UGCaCGCUGGuCAGCACCGuGCGg -3'
miRNA:   3'- gAGaAUGcGCGGCCcGUUGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 53430 0.66 0.599572
Target:  5'- -aCggACGUGCUGuuccuccagaaGcGCGGCGCCGGCGu -3'
miRNA:   3'- gaGaaUGCGCGGC-----------C-CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 57515 0.66 0.599572
Target:  5'- uUCagcguCGCGCCGGGCAuCgACC-GCGa -3'
miRNA:   3'- gAGaau--GCGCGGCCCGUuG-UGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 19120 0.66 0.598513
Target:  5'- -gCUUGuCGCgGUCGGGCAGCAugucgauaggaacCCGGUu -3'
miRNA:   3'- gaGAAU-GCG-CGGCCCGUUGU-------------GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 34015 0.66 0.588996
Target:  5'- ----gGCGUgacGCCGGGCcGCAUCGuGCGc -3'
miRNA:   3'- gagaaUGCG---CGGCCCGuUGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 20015 0.66 0.588996
Target:  5'- -aCUacUGCGUggcaaagaGCCGcGGCGACAUUGGCa -3'
miRNA:   3'- gaGA--AUGCG--------CGGC-CCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 42239 0.66 0.588996
Target:  5'- aUCggcCGCGaCCGGGCccGGCGCCGcGUa -3'
miRNA:   3'- gAGaauGCGC-GGCCCG--UUGUGGC-CGc -5'
24049 5' -58.5 NC_005262.1 + 61236 0.66 0.588996
Target:  5'- ---aUACGUGUgGcGCAccuACACCGGCGg -3'
miRNA:   3'- gagaAUGCGCGgCcCGU---UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 60685 0.66 0.588996
Target:  5'- -gCUgGCGaCGCUGGGCuucuuCGCgGGCGc -3'
miRNA:   3'- gaGAaUGC-GCGGCCCGuu---GUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 60178 0.66 0.578453
Target:  5'- ----gGCGCucgGCCaguGGGCGGCaACCGGCa -3'
miRNA:   3'- gagaaUGCG---CGG---CCCGUUG-UGGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.