miRNA display CGI


Results 61 - 80 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 46906 0.68 0.496175
Target:  5'- -aCU--CGCGCaGGGCGAU-CCGGCGa -3'
miRNA:   3'- gaGAauGCGCGgCCCGUUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 51121 0.68 0.496175
Target:  5'- gCUCg-ACGCGCCGGuCGACAa-GGCGc -3'
miRNA:   3'- -GAGaaUGCGCGGCCcGUUGUggCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44157 0.68 0.48624
Target:  5'- ----cGCGCGCgauCGGGCAggagcGCGgCGGCGa -3'
miRNA:   3'- gagaaUGCGCG---GCCCGU-----UGUgGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 53811 0.68 0.466662
Target:  5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3'
miRNA:   3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 43845 0.68 0.466662
Target:  5'- -----cCGCGCgCGGcGguGCGCCGGCa -3'
miRNA:   3'- gagaauGCGCG-GCC-CguUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 58896 0.68 0.457026
Target:  5'- -gCUgcCGCGCUGcGCGAUcagGCCGGCGg -3'
miRNA:   3'- gaGAauGCGCGGCcCGUUG---UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 32883 0.68 0.496175
Target:  5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3'
miRNA:   3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44703 0.68 0.496175
Target:  5'- -cCUUGCGCG-CGGGCuucucGCGCuCGaGCGg -3'
miRNA:   3'- gaGAAUGCGCgGCCCGu----UGUG-GC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 17076 0.68 0.460867
Target:  5'- ----cGCGCGCUcggccggcggcagcaGGGCAAUAUCGGUGc -3'
miRNA:   3'- gagaaUGCGCGG---------------CCCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 291 0.69 0.42878
Target:  5'- gCUCgugcGCGCGCUGcGGaucguCACCGGCa -3'
miRNA:   3'- -GAGaa--UGCGCGGC-CCguu--GUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 56518 0.69 0.438082
Target:  5'- aUCUggACGCGCCGuGGUu-C-CCGGCa -3'
miRNA:   3'- gAGAa-UGCGCGGC-CCGuuGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5187 0.69 0.438082
Target:  5'- ----cGCGgGCgCGGGCGcgGCCGGCGc -3'
miRNA:   3'- gagaaUGCgCG-GCCCGUugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 54047 0.69 0.42878
Target:  5'- aUCga--GCGCaCGGGCGACGaCGGCa -3'
miRNA:   3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5'
24049 5' -58.5 NC_005262.1 + 19441 0.69 0.423255
Target:  5'- aUCUgaaGCGCUGGGCGuuggccucgaugcuCACCGGaCGg -3'
miRNA:   3'- gAGAaugCGCGGCCCGUu-------------GUGGCC-GC- -5'
24049 5' -58.5 NC_005262.1 + 51421 0.69 0.419596
Target:  5'- gCUCggcgGCGCGCgcgaGGGCGAUACCGuCa -3'
miRNA:   3'- -GAGaa--UGCGCGg---CCCGUUGUGGCcGc -5'
24049 5' -58.5 NC_005262.1 + 59119 0.69 0.410531
Target:  5'- -aCUacCGCGCCGaGGCGA-ACCGGCc -3'
miRNA:   3'- gaGAauGCGCGGC-CCGUUgUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 47740 0.69 0.410531
Target:  5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3'
miRNA:   3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 22961 0.69 0.42878
Target:  5'- gCUCUgccgGCuCGaaguCCGaGGCAACGCUGGCGa -3'
miRNA:   3'- -GAGAa---UGcGC----GGC-CCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 62991 0.69 0.42878
Target:  5'- --aUUGCGCGCCagcucgucGGC-GCGCUGGCGg -3'
miRNA:   3'- gagAAUGCGCGGc-------CCGuUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 48165 0.69 0.438082
Target:  5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3'
miRNA:   3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.