Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 48165 | 0.69 | 0.438082 |
Target: 5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3' miRNA: 3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 47740 | 0.69 | 0.410531 |
Target: 5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3' miRNA: 3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 59119 | 0.69 | 0.410531 |
Target: 5'- -aCUacCGCGCCGaGGCGA-ACCGGCc -3' miRNA: 3'- gaGAauGCGCGGC-CCGUUgUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 19441 | 0.69 | 0.423255 |
Target: 5'- aUCUgaaGCGCUGGGCGuuggccucgaugcuCACCGGaCGg -3' miRNA: 3'- gAGAaugCGCGGCCCGUu-------------GUGGCC-GC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 54047 | 0.69 | 0.42878 |
Target: 5'- aUCga--GCGCaCGGGCGACGaCGGCa -3' miRNA: 3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5187 | 0.69 | 0.438082 |
Target: 5'- ----cGCGgGCgCGGGCGcgGCCGGCGc -3' miRNA: 3'- gagaaUGCgCG-GCCCGUugUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 56518 | 0.69 | 0.438082 |
Target: 5'- aUCUggACGCGCCGuGGUu-C-CCGGCa -3' miRNA: 3'- gAGAa-UGCGCGGC-CCGuuGuGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 51421 | 0.69 | 0.419596 |
Target: 5'- gCUCggcgGCGCGCgcgaGGGCGAUACCGuCa -3' miRNA: 3'- -GAGaa--UGCGCGg---CCCGUUGUGGCcGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46611 | 0.69 | 0.40159 |
Target: 5'- -----cCGCGCUGGGCugcuGCGCgGGCa -3' miRNA: 3'- gagaauGCGCGGCCCGu---UGUGgCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 10029 | 0.69 | 0.419596 |
Target: 5'- uUCUUcgccgucaGCGCGCUGcGCuuuGCGCCGGUGu -3' miRNA: 3'- gAGAA--------UGCGCGGCcCGu--UGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 43845 | 0.68 | 0.466662 |
Target: 5'- -----cCGCGCgCGGcGguGCGCCGGCa -3' miRNA: 3'- gagaauGCGCG-GCC-CguUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5156 | 0.68 | 0.473469 |
Target: 5'- gUCgcACGCGCCgccgccgcGGGCcugcccgccgaucaGGCGCCGGCc -3' miRNA: 3'- gAGaaUGCGCGG--------CCCG--------------UUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53790 | 0.68 | 0.476401 |
Target: 5'- cCUUcgACGCgGCCGGGUucugcGCGCCcGGCu -3' miRNA: 3'- -GAGaaUGCG-CGGCCCGu----UGUGG-CCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 23950 | 0.68 | 0.476401 |
Target: 5'- ----aACGaccggaCGGGCGGCACCGGCa -3' miRNA: 3'- gagaaUGCgcg---GCCCGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 48129 | 0.68 | 0.48624 |
Target: 5'- ----gACGCGCuugCGGGCGcgGCCGGCu -3' miRNA: 3'- gagaaUGCGCG---GCCCGUugUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 61794 | 0.68 | 0.48624 |
Target: 5'- ----aGCGCGCCGaGCgAAC-CCGGCGc -3' miRNA: 3'- gagaaUGCGCGGCcCG-UUGuGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46642 | 0.68 | 0.496175 |
Target: 5'- gUCguggGCGuCGCgGGaGCGGCGgCCGGCGn -3' miRNA: 3'- gAGaa--UGC-GCGgCC-CGUUGU-GGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53811 | 0.68 | 0.466662 |
Target: 5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3' miRNA: 3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 32883 | 0.68 | 0.496175 |
Target: 5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3' miRNA: 3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 58954 | 0.68 | 0.447498 |
Target: 5'- ----aACGCG-CGGaGCuGCGCCGGCGu -3' miRNA: 3'- gagaaUGCGCgGCC-CGuUGUGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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