miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 16884 0.71 0.304422
Target:  5'- ----cGCGCGCCGGGCcGCACCacaccGCa -3'
miRNA:   3'- gagaaUGCGCGGCCCGuUGUGGc----CGc -5'
24049 5' -58.5 NC_005262.1 + 51241 0.71 0.309562
Target:  5'- cCUCaUGCGCGCCGgcuacgguaaggacGGCAAgcugaaccuCACCGGCc -3'
miRNA:   3'- -GAGaAUGCGCGGC--------------CCGUU---------GUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 46779 0.71 0.311786
Target:  5'- ---cUGCGCGCgCGGcGCugacuGCAUCGGCGg -3'
miRNA:   3'- gagaAUGCGCG-GCC-CGu----UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 52603 0.71 0.334685
Target:  5'- ----cGCGUaaaGCCGGGCGagcugaagcGCACCGGCu -3'
miRNA:   3'- gagaaUGCG---CGGCCCGU---------UGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 34577 0.71 0.334685
Target:  5'- gUCgugUGCGCGCCGuGCGGCGCC-GUGa -3'
miRNA:   3'- gAGa--AUGCGCGGCcCGUUGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 41424 0.7 0.350621
Target:  5'- cCUCgUAUGCGCCGacUAACACgGGCGg -3'
miRNA:   3'- -GAGaAUGCGCGGCccGUUGUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 2660 0.7 0.35879
Target:  5'- ----cGCgGCGCCGGGCGGCGucCUGGCc -3'
miRNA:   3'- gagaaUG-CGCGGCCCGUUGU--GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 4551 0.7 0.35879
Target:  5'- aUCgUGCGCGCgCGGcGCAucucGCGCCaGCGg -3'
miRNA:   3'- gAGaAUGCGCG-GCC-CGU----UGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 24963 0.7 0.36709
Target:  5'- -cCUUcACGCGCCGGcggauGCAcaucgccgaGCACUGGCGc -3'
miRNA:   3'- gaGAA-UGCGCGGCC-----CGU---------UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61913 0.7 0.36709
Target:  5'- ---aUACGcCGCaGGGCuGCGCCGGCu -3'
miRNA:   3'- gagaAUGC-GCGgCCCGuUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5156 0.7 0.375522
Target:  5'- gCUCg-GCGCGCUGaucGGUGACGgCCGGCGu -3'
miRNA:   3'- -GAGaaUGCGCGGC---CCGUUGU-GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 36184 0.7 0.375522
Target:  5'- -aCUgACaUGCCGGGCAAUGCCugGGCGg -3'
miRNA:   3'- gaGAaUGcGCGGCCCGUUGUGG--CCGC- -5'
24049 5' -58.5 NC_005262.1 + 11761 0.7 0.384083
Target:  5'- --gUUGCGCgcgaagcucuGCCGGccagcgugcagcGCGACGCCGGCGc -3'
miRNA:   3'- gagAAUGCG----------CGGCC------------CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61141 0.7 0.384083
Target:  5'- ----gACGCGCUGGcGCAGCAgauCgCGGCGg -3'
miRNA:   3'- gagaaUGCGCGGCC-CGUUGU---G-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44764 0.69 0.392773
Target:  5'- uUCggauCGgGCgCGGGCGcguCGCCGGCGu -3'
miRNA:   3'- gAGaau-GCgCG-GCCCGUu--GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 24316 0.69 0.400702
Target:  5'- aUCUUacucaaccaaucgGCGUGCCGGcGCAGCGuCgCGGCu -3'
miRNA:   3'- gAGAA-------------UGCGCGGCC-CGUUGU-G-GCCGc -5'
24049 5' -58.5 NC_005262.1 + 46611 0.69 0.40159
Target:  5'- -----cCGCGCUGGGCugcuGCGCgGGCa -3'
miRNA:   3'- gagaauGCGCGGCCCGu---UGUGgCCGc -5'
24049 5' -58.5 NC_005262.1 + 47740 0.69 0.410531
Target:  5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3'
miRNA:   3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 59119 0.69 0.410531
Target:  5'- -aCUacCGCGCCGaGGCGA-ACCGGCc -3'
miRNA:   3'- gaGAauGCGCGGC-CCGUUgUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 49840 0.69 0.410531
Target:  5'- cCUCgg--GCG-CGGGCGcCGCCGGCGu -3'
miRNA:   3'- -GAGaaugCGCgGCCCGUuGUGGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.