miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 51421 0.69 0.419596
Target:  5'- gCUCggcgGCGCGCgcgaGGGCGAUACCGuCa -3'
miRNA:   3'- -GAGaa--UGCGCGg---CCCGUUGUGGCcGc -5'
24049 5' -58.5 NC_005262.1 + 10029 0.69 0.419596
Target:  5'- uUCUUcgccgucaGCGCGCUGcGCuuuGCGCCGGUGu -3'
miRNA:   3'- gAGAA--------UGCGCGGCcCGu--UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 19441 0.69 0.423255
Target:  5'- aUCUgaaGCGCUGGGCGuuggccucgaugcuCACCGGaCGg -3'
miRNA:   3'- gAGAaugCGCGGCCCGUu-------------GUGGCC-GC- -5'
24049 5' -58.5 NC_005262.1 + 291 0.69 0.42878
Target:  5'- gCUCgugcGCGCGCUGcGGaucguCACCGGCa -3'
miRNA:   3'- -GAGaa--UGCGCGGC-CCguu--GUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 62991 0.69 0.42878
Target:  5'- --aUUGCGCGCCagcucgucGGC-GCGCUGGCGg -3'
miRNA:   3'- gagAAUGCGCGGc-------CCGuUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 54047 0.69 0.42878
Target:  5'- aUCga--GCGCaCGGGCGACGaCGGCa -3'
miRNA:   3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5'
24049 5' -58.5 NC_005262.1 + 22961 0.69 0.42878
Target:  5'- gCUCUgccgGCuCGaaguCCGaGGCAACGCUGGCGa -3'
miRNA:   3'- -GAGAa---UGcGC----GGC-CCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 56518 0.69 0.438082
Target:  5'- aUCUggACGCGCCGuGGUu-C-CCGGCa -3'
miRNA:   3'- gAGAa-UGCGCGGC-CCGuuGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5187 0.69 0.438082
Target:  5'- ----cGCGgGCgCGGGCGcgGCCGGCGc -3'
miRNA:   3'- gagaaUGCgCG-GCCCGUugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 48165 0.69 0.438082
Target:  5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3'
miRNA:   3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5'
24049 5' -58.5 NC_005262.1 + 58954 0.68 0.447498
Target:  5'- ----aACGCG-CGGaGCuGCGCCGGCGu -3'
miRNA:   3'- gagaaUGCGCgGCC-CGuUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46704 0.68 0.447498
Target:  5'- -cCUUcauCGCGUCGGGCGGgaucuguggcguCugCGGCGa -3'
miRNA:   3'- gaGAAu--GCGCGGCCCGUU------------GugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 54268 0.68 0.457026
Target:  5'- ----cACGCGCuCGGaCAGgACCGGCGc -3'
miRNA:   3'- gagaaUGCGCG-GCCcGUUgUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 58896 0.68 0.457026
Target:  5'- -gCUgcCGCGCUGcGCGAUcagGCCGGCGg -3'
miRNA:   3'- gaGAauGCGCGGCcCGUUG---UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 17076 0.68 0.460867
Target:  5'- ----cGCGCGCUcggccggcggcagcaGGGCAAUAUCGGUGc -3'
miRNA:   3'- gagaaUGCGCGG---------------CCCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44976 0.68 0.466662
Target:  5'- gUCUUGCaGCgGCUGGaacacauccuuGUAGCGCUGGCGg -3'
miRNA:   3'- gAGAAUG-CG-CGGCC-----------CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 43845 0.68 0.466662
Target:  5'- -----cCGCGCgCGGcGguGCGCCGGCa -3'
miRNA:   3'- gagaauGCGCG-GCC-CguUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 53811 0.68 0.466662
Target:  5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3'
miRNA:   3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 5156 0.68 0.473469
Target:  5'- gUCgcACGCGCCgccgccgcGGGCcugcccgccgaucaGGCGCCGGCc -3'
miRNA:   3'- gAGaaUGCGCGG--------CCCG--------------UUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 23950 0.68 0.476401
Target:  5'- ----aACGaccggaCGGGCGGCACCGGCa -3'
miRNA:   3'- gagaaUGCgcg---GCCCGUUGUGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.