miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 29863 0.67 0.536769
Target:  5'- -----cCGCGCCGuccGGCAcuACGCCgGGCGg -3'
miRNA:   3'- gagaauGCGCGGC---CCGU--UGUGG-CCGC- -5'
24049 5' -58.5 NC_005262.1 + 30241 0.67 0.526503
Target:  5'- -gCUU-CGCGUC-GGCAucCGCCGGCGc -3'
miRNA:   3'- gaGAAuGCGCGGcCCGUu-GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 54920 0.67 0.516311
Target:  5'- gCUCgcaccugACGCuGCCGGGCGuguCGCUGcGCu -3'
miRNA:   3'- -GAGaa-----UGCG-CGGCCCGUu--GUGGC-CGc -5'
24049 5' -58.5 NC_005262.1 + 37877 0.67 0.516311
Target:  5'- ----gGCGCGCCcGGaGGCACgGGCGg -3'
miRNA:   3'- gagaaUGCGCGGcCCgUUGUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 4117 0.67 0.516311
Target:  5'- uCUCcgcGCGCgaaaGCCGGGCAuaaaaaaacgGCGCCGcGUGg -3'
miRNA:   3'- -GAGaa-UGCG----CGGCCCGU----------UGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 49061 0.67 0.516311
Target:  5'- uUCUUGaGCGCCGccuGCAuCugCGGCGu -3'
miRNA:   3'- gAGAAUgCGCGGCc--CGUuGugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 33478 0.67 0.515297
Target:  5'- ---cUGCGaccuugaGCUGGGCGGCgucgacgaucacgGCCGGCGg -3'
miRNA:   3'- gagaAUGCg------CGGCCCGUUG-------------UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 43069 0.67 0.510235
Target:  5'- ----cGCGCGCCGcGGCAGCuucaucaucgaccugACCGGgCa -3'
miRNA:   3'- gagaaUGCGCGGC-CCGUUG---------------UGGCC-Gc -5'
24049 5' -58.5 NC_005262.1 + 39860 0.67 0.5062
Target:  5'- ---aUACGCGUCGGGaUggUcgGCUGGCGg -3'
miRNA:   3'- gagaAUGCGCGGCCC-GuuG--UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 41282 0.67 0.505194
Target:  5'- gCUCgaaGCGguCGCCGGGCGcGCACgcgaucgCGGCGg -3'
miRNA:   3'- -GAGaa-UGC--GCGGCCCGU-UGUG-------GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 51121 0.68 0.496175
Target:  5'- gCUCg-ACGCGCCGGuCGACAa-GGCGc -3'
miRNA:   3'- -GAGaaUGCGCGGCCcGUUGUggCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46906 0.68 0.496175
Target:  5'- -aCU--CGCGCaGGGCGAU-CCGGCGa -3'
miRNA:   3'- gaGAauGCGCGgCCCGUUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46642 0.68 0.496175
Target:  5'- gUCguggGCGuCGCgGGaGCGGCGgCCGGCGn -3'
miRNA:   3'- gAGaa--UGC-GCGgCC-CGUUGU-GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 32883 0.68 0.496175
Target:  5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3'
miRNA:   3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44703 0.68 0.496175
Target:  5'- -cCUUGCGCG-CGGGCuucucGCGCuCGaGCGg -3'
miRNA:   3'- gaGAAUGCGCgGCCCGu----UGUG-GC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 61794 0.68 0.48624
Target:  5'- ----aGCGCGCCGaGCgAAC-CCGGCGc -3'
miRNA:   3'- gagaaUGCGCGGCcCG-UUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44157 0.68 0.48624
Target:  5'- ----cGCGCGCgauCGGGCAggagcGCGgCGGCGa -3'
miRNA:   3'- gagaaUGCGCG---GCCCGU-----UGUgGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 48129 0.68 0.48624
Target:  5'- ----gACGCGCuugCGGGCGcgGCCGGCu -3'
miRNA:   3'- gagaaUGCGCG---GCCCGUugUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 23950 0.68 0.476401
Target:  5'- ----aACGaccggaCGGGCGGCACCGGCa -3'
miRNA:   3'- gagaaUGCgcg---GCCCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 53790 0.68 0.476401
Target:  5'- cCUUcgACGCgGCCGGGUucugcGCGCCcGGCu -3'
miRNA:   3'- -GAGaaUGCG-CGGCCCGu----UGUGG-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.