miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 291 0.69 0.42878
Target:  5'- gCUCgugcGCGCGCUGcGGaucguCACCGGCa -3'
miRNA:   3'- -GAGaa--UGCGCGGC-CCguu--GUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 299 0.66 0.610174
Target:  5'- -cCUUGCgacagGCGUCGGGC-ACGCCaGCc -3'
miRNA:   3'- gaGAAUG-----CGCGGCCCGuUGUGGcCGc -5'
24049 5' -58.5 NC_005262.1 + 2660 0.7 0.35879
Target:  5'- ----cGCgGCGCCGGGCGGCGucCUGGCc -3'
miRNA:   3'- gagaaUG-CGCGGCCCGUUGU--GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 4117 0.67 0.516311
Target:  5'- uCUCcgcGCGCgaaaGCCGGGCAuaaaaaaacgGCGCCGcGUGg -3'
miRNA:   3'- -GAGaa-UGCG----CGGCCCGU----------UGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 4551 0.7 0.35879
Target:  5'- aUCgUGCGCGCgCGGcGCAucucGCGCCaGCGg -3'
miRNA:   3'- gAGaAUGCGCG-GCC-CGU----UGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 5156 0.7 0.375522
Target:  5'- gCUCg-GCGCGCUGaucGGUGACGgCCGGCGu -3'
miRNA:   3'- -GAGaaUGCGCGGC---CCGUUGU-GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 5156 0.68 0.473469
Target:  5'- gUCgcACGCGCCgccgccgcGGGCcugcccgccgaucaGGCGCCGGCc -3'
miRNA:   3'- gAGaaUGCGCGG--------CCCG--------------UUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5187 0.69 0.438082
Target:  5'- ----cGCGgGCgCGGGCGcgGCCGGCGc -3'
miRNA:   3'- gagaaUGCgCG-GCCCGUugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 5281 0.77 0.119407
Target:  5'- cCUCgguCGCGCCGGccgcgcccgcgcccGCGACGCCGGCc -3'
miRNA:   3'- -GAGaauGCGCGGCC--------------CGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5525 0.66 0.578453
Target:  5'- gUCaUGcCGCGCCGGGacaucgaaaaGAC-CCGGCu -3'
miRNA:   3'- gAGaAU-GCGCGGCCCg---------UUGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5857 0.66 0.599572
Target:  5'- aUC-UGCaCGCUGGuCAGCACCGuGCGg -3'
miRNA:   3'- gAGaAUGcGCGGCCcGUUGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 6318 0.67 0.547103
Target:  5'- ----cGCGCGgCGGGCuucAGCAucUCGGCGg -3'
miRNA:   3'- gagaaUGCGCgGCCCG---UUGU--GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 7753 0.66 0.609113
Target:  5'- aUCUUugGCGUGCCGcucGCGGagauagccgucgcCGCCGGCGu -3'
miRNA:   3'- gAGAA--UGCGCGGCc--CGUU-------------GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 9242 0.67 0.5575
Target:  5'- ----aAgGCGCCGGGUGAUccgcauuccgACCGGCc -3'
miRNA:   3'- gagaaUgCGCGGCCCGUUG----------UGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 10029 0.69 0.419596
Target:  5'- uUCUUcgccgucaGCGCGCUGcGCuuuGCGCCGGUGu -3'
miRNA:   3'- gAGAA--------UGCGCGGCcCGu--UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 10452 0.66 0.610174
Target:  5'- gCUCg-GCaaGCCGGGCGgaagccgcgacgACAgCGGCGa -3'
miRNA:   3'- -GAGaaUGcgCGGCCCGU------------UGUgGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 10974 0.77 0.127069
Target:  5'- -gCUgucgGCGCGCCGGG-AACGCCGGUc -3'
miRNA:   3'- gaGAa---UGCGCGGCCCgUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 11761 0.7 0.384083
Target:  5'- --gUUGCGCgcgaagcucuGCCGGccagcgugcagcGCGACGCCGGCGc -3'
miRNA:   3'- gagAAUGCG----------CGGCC------------CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 12896 0.66 0.575298
Target:  5'- uUCUUcACGCGCCGGcuGCG-CGCCgcccaaugcucacgGGCGu -3'
miRNA:   3'- gAGAA-UGCGCGGCC--CGUuGUGG--------------CCGC- -5'
24049 5' -58.5 NC_005262.1 + 13551 0.66 0.599572
Target:  5'- ----gACGCGCgCGGGCuucGCGCCcuuGCGa -3'
miRNA:   3'- gagaaUGCGCG-GCCCGu--UGUGGc--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.