miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 14245 0.66 0.567952
Target:  5'- aCUCcucgGCGCGgCGGaCAAUcCCGGCGc -3'
miRNA:   3'- -GAGaa--UGCGCgGCCcGUUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 15486 0.67 0.536769
Target:  5'- -gCUUACaccgaGCGCgGcGGCucgcuCACCGGCGa -3'
miRNA:   3'- gaGAAUG-----CGCGgC-CCGuu---GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 16504 0.66 0.567952
Target:  5'- ----gAgGCGCUGGGCGcuGCGCUGGgGc -3'
miRNA:   3'- gagaaUgCGCGGCCCGU--UGUGGCCgC- -5'
24049 5' -58.5 NC_005262.1 + 16729 0.73 0.238074
Target:  5'- ---gUGCGCaCCGGGCAGCACgGGUc -3'
miRNA:   3'- gagaAUGCGcGGCCCGUUGUGgCCGc -5'
24049 5' -58.5 NC_005262.1 + 16884 0.71 0.304422
Target:  5'- ----cGCGCGCCGGGCcGCACCacaccGCa -3'
miRNA:   3'- gagaaUGCGCGGCCCGuUGUGGc----CGc -5'
24049 5' -58.5 NC_005262.1 + 17076 0.68 0.460867
Target:  5'- ----cGCGCGCUcggccggcggcagcaGGGCAAUAUCGGUGc -3'
miRNA:   3'- gagaaUGCGCGG---------------CCCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 17492 0.66 0.610174
Target:  5'- ----cGCGCGCCGcGcGCGACGCgucgauCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC-C-CGUUGUG------GCCGc -5'
24049 5' -58.5 NC_005262.1 + 17669 0.67 0.536769
Target:  5'- ----aGCGCGCCGagcuggaagcGGCGAagaaGCCGGCc -3'
miRNA:   3'- gagaaUGCGCGGC----------CCGUUg---UGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 17743 0.67 0.5575
Target:  5'- gCUCg-GCGCGCuggCGGGCGAUcucugccugcuGCuCGGCGa -3'
miRNA:   3'- -GAGaaUGCGCG---GCCCGUUG-----------UG-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 18012 0.66 0.610174
Target:  5'- gCUCgccgUugGCGUCGGcGCcg-AUCGGCGg -3'
miRNA:   3'- -GAGa---AugCGCGGCC-CGuugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 19120 0.66 0.598513
Target:  5'- -gCUUGuCGCgGUCGGGCAGCAugucgauaggaacCCGGUu -3'
miRNA:   3'- gaGAAU-GCG-CGGCCCGUUGU-------------GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 19441 0.69 0.423255
Target:  5'- aUCUgaaGCGCUGGGCGuuggccucgaugcuCACCGGaCGg -3'
miRNA:   3'- gAGAaugCGCGGCCCGUu-------------GUGGCC-GC- -5'
24049 5' -58.5 NC_005262.1 + 20015 0.66 0.588996
Target:  5'- -aCUacUGCGUggcaaagaGCCGcGGCGACAUUGGCa -3'
miRNA:   3'- gaGA--AUGCG--------CGGC-CCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 22961 0.69 0.42878
Target:  5'- gCUCUgccgGCuCGaaguCCGaGGCAACGCUGGCGa -3'
miRNA:   3'- -GAGAa---UGcGC----GGC-CCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 23950 0.68 0.476401
Target:  5'- ----aACGaccggaCGGGCGGCACCGGCa -3'
miRNA:   3'- gagaaUGCgcg---GCCCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 24316 0.69 0.400702
Target:  5'- aUCUUacucaaccaaucgGCGUGCCGGcGCAGCGuCgCGGCu -3'
miRNA:   3'- gAGAA-------------UGCGCGGCC-CGUUGU-G-GCCGc -5'
24049 5' -58.5 NC_005262.1 + 24349 0.65 0.617606
Target:  5'- gCUCUgcgucgGCGCGCCugauaccuGCAACccugucgacgccaaACCGGCGg -3'
miRNA:   3'- -GAGAa-----UGCGCGGcc------CGUUG--------------UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 24963 0.7 0.36709
Target:  5'- -cCUUcACGCGCCGGcggauGCAcaucgccgaGCACUGGCGc -3'
miRNA:   3'- gaGAA-UGCGCGGCC-----CGU---------UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 26125 0.74 0.19409
Target:  5'- -gCUUGCGCGCCGcGGCgAGCugCugGGCGu -3'
miRNA:   3'- gaGAAUGCGCGGC-CCG-UUGugG--CCGC- -5'
24049 5' -58.5 NC_005262.1 + 26563 0.66 0.575298
Target:  5'- ----gACGCGCUGcgccaguucgcgcaGGCAuACGCUGGCGg -3'
miRNA:   3'- gagaaUGCGCGGC--------------CCGU-UGUGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.