miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 28151 0.67 0.536769
Target:  5'- aUCUUccccgaGCGCG-CGGcGCAACugCGcGCGg -3'
miRNA:   3'- gAGAA------UGCGCgGCC-CGUUGugGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 28373 0.75 0.170351
Target:  5'- -gCUUGCGCGCauaGGcGaCAGCGCCGGCc -3'
miRNA:   3'- gaGAAUGCGCGg--CC-C-GUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 29831 0.66 0.567952
Target:  5'- ----gGCGgguuaGCCGGG-AGCGCCGGCu -3'
miRNA:   3'- gagaaUGCg----CGGCCCgUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 29863 0.67 0.536769
Target:  5'- -----cCGCGCCGuccGGCAcuACGCCgGGCGg -3'
miRNA:   3'- gagaauGCGCGGC---CCGU--UGUGG-CCGC- -5'
24049 5' -58.5 NC_005262.1 + 30241 0.67 0.526503
Target:  5'- -gCUU-CGCGUC-GGCAucCGCCGGCGc -3'
miRNA:   3'- gaGAAuGCGCGGcCCGUu-GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 32883 0.68 0.496175
Target:  5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3'
miRNA:   3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 33478 0.67 0.515297
Target:  5'- ---cUGCGaccuugaGCUGGGCGGCgucgacgaucacgGCCGGCGg -3'
miRNA:   3'- gagaAUGCg------CGGCCCGUUG-------------UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 33693 0.73 0.250301
Target:  5'- uUCcUGCGaCGUCgGGGCGACugCGGUGg -3'
miRNA:   3'- gAGaAUGC-GCGG-CCCGUUGugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 34015 0.66 0.588996
Target:  5'- ----gGCGUgacGCCGGGCcGCAUCGuGCGc -3'
miRNA:   3'- gagaaUGCG---CGGCCCGuUGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 34252 0.72 0.269608
Target:  5'- uCUCgaccuuCGUGCC-GGCGACgGCCGGCGg -3'
miRNA:   3'- -GAGaau---GCGCGGcCCGUUG-UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 34577 0.71 0.334685
Target:  5'- gUCgugUGCGCGCCGuGCGGCGCC-GUGa -3'
miRNA:   3'- gAGa--AUGCGCGGCcCGUUGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 35156 0.72 0.276305
Target:  5'- -----cCGCcgauCCGGGCGACGCUGGCGg -3'
miRNA:   3'- gagaauGCGc---GGCCCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 35644 0.72 0.276305
Target:  5'- gCUCUUuccCGCGCCGGcgaGCGACAUcgCGGCu -3'
miRNA:   3'- -GAGAAu--GCGCGGCC---CGUUGUG--GCCGc -5'
24049 5' -58.5 NC_005262.1 + 35827 0.66 0.567952
Target:  5'- ----cAUGgGCCGGaGCGGCGUCGGCGc -3'
miRNA:   3'- gagaaUGCgCGGCC-CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 36184 0.7 0.375522
Target:  5'- -aCUgACaUGCCGGGCAAUGCCugGGCGg -3'
miRNA:   3'- gaGAaUGcGCGGCCCGUUGUGG--CCGC- -5'
24049 5' -58.5 NC_005262.1 + 37877 0.67 0.516311
Target:  5'- ----gGCGCGCCcGGaGGCACgGGCGg -3'
miRNA:   3'- gagaaUGCGCGGcCCgUUGUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 39860 0.67 0.5062
Target:  5'- ---aUACGCGUCGGGaUggUcgGCUGGCGg -3'
miRNA:   3'- gagaAUGCGCGGCCC-GuuG--UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 40553 1.09 0.000611
Target:  5'- gCUCUUACGCGCCGGGCAACACCGGCGg -3'
miRNA:   3'- -GAGAAUGCGCGGCCCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 41282 0.67 0.505194
Target:  5'- gCUCgaaGCGguCGCCGGGCGcGCACgcgaucgCGGCGg -3'
miRNA:   3'- -GAGaa-UGC--GCGGCCCGU-UGUG-------GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 41283 0.66 0.578453
Target:  5'- uUCggcCGCGCgUGGGCGACAUcaagguauggcgCGGCGc -3'
miRNA:   3'- gAGaauGCGCG-GCCCGUUGUG------------GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.