miRNA display CGI


Results 61 - 80 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 41424 0.7 0.350621
Target:  5'- cCUCgUAUGCGCCGacUAACACgGGCGg -3'
miRNA:   3'- -GAGaAUGCGCGGCccGUUGUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 41606 0.66 0.610174
Target:  5'- ---cUugGCGCUcaGGGCAGCGgaaCGGUGa -3'
miRNA:   3'- gagaAugCGCGG--CCCGUUGUg--GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 42239 0.66 0.588996
Target:  5'- aUCggcCGCGaCCGGGCccGGCGCCGcGUa -3'
miRNA:   3'- gAGaauGCGC-GGCCCG--UUGUGGC-CGc -5'
24049 5' -58.5 NC_005262.1 + 42884 0.67 0.5575
Target:  5'- ------gGCGUCGGGCGacGCGCCGGa- -3'
miRNA:   3'- gagaaugCGCGGCCCGU--UGUGGCCgc -5'
24049 5' -58.5 NC_005262.1 + 43069 0.67 0.510235
Target:  5'- ----cGCGCGCCGcGGCAGCuucaucaucgaccugACCGGgCa -3'
miRNA:   3'- gagaaUGCGCGGC-CCGUUG---------------UGGCC-Gc -5'
24049 5' -58.5 NC_005262.1 + 43845 0.68 0.466662
Target:  5'- -----cCGCGCgCGGcGguGCGCCGGCa -3'
miRNA:   3'- gagaauGCGCG-GCC-CguUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 44157 0.68 0.48624
Target:  5'- ----cGCGCGCgauCGGGCAggagcGCGgCGGCGa -3'
miRNA:   3'- gagaaUGCGCG---GCCCGU-----UGUgGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44703 0.68 0.496175
Target:  5'- -cCUUGCGCG-CGGGCuucucGCGCuCGaGCGg -3'
miRNA:   3'- gaGAAUGCGCgGCCCGu----UGUG-GC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 44764 0.69 0.392773
Target:  5'- uUCggauCGgGCgCGGGCGcguCGCCGGCGu -3'
miRNA:   3'- gAGaau-GCgCG-GCCCGUu--GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44976 0.68 0.466662
Target:  5'- gUCUUGCaGCgGCUGGaacacauccuuGUAGCGCUGGCGg -3'
miRNA:   3'- gAGAAUG-CG-CGGCC-----------CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 45206 0.72 0.289394
Target:  5'- cCUCgcagGCGgcaugucCGCCGGGCucggccugAACGCCGGCa -3'
miRNA:   3'- -GAGaa--UGC-------GCGGCCCG--------UUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 46453 0.66 0.578453
Target:  5'- -----cCGCGCCGGacccgaauGCcGCGCCGGCc -3'
miRNA:   3'- gagaauGCGCGGCC--------CGuUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 46611 0.69 0.40159
Target:  5'- -----cCGCGCUGGGCugcuGCGCgGGCa -3'
miRNA:   3'- gagaauGCGCGGCCCGu---UGUGgCCGc -5'
24049 5' -58.5 NC_005262.1 + 46642 0.68 0.496175
Target:  5'- gUCguggGCGuCGCgGGaGCGGCGgCCGGCGn -3'
miRNA:   3'- gAGaa--UGC-GCGgCC-CGUUGU-GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46704 0.68 0.447498
Target:  5'- -cCUUcauCGCGUCGGGCGGgaucuguggcguCugCGGCGa -3'
miRNA:   3'- gaGAAu--GCGCGGCCCGUU------------GugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46779 0.71 0.311786
Target:  5'- ---cUGCGCGCgCGGcGCugacuGCAUCGGCGg -3'
miRNA:   3'- gagaAUGCGCG-GCC-CGu----UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 46812 0.66 0.610174
Target:  5'- aUCcgguCGUGCCGGauuGCGCCGGCu -3'
miRNA:   3'- gAGaau-GCGCGGCCcguUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 46906 0.68 0.496175
Target:  5'- -aCU--CGCGCaGGGCGAU-CCGGCGa -3'
miRNA:   3'- gaGAauGCGCGgCCCGUUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 47740 0.69 0.410531
Target:  5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3'
miRNA:   3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 47843 0.66 0.567952
Target:  5'- ----cGCGCgauGCCGGGUucgccGCgGCCGGCGg -3'
miRNA:   3'- gagaaUGCG---CGGCCCGu----UG-UGGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.